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GEO accession:
Series GSE218798
Query DataSets for GSE218798
Status
Public on Oct 20, 2023
Title
Impact of genetic depletion or pharmacological inhibition of LSD1 on gene expression in ovarian cancer cells
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37973845
Submission date
Nov 25, 2022
Last update date
Dec 06, 2023
Contact name
Lei Tao
E-mail(s)
Tlei1203@outlook.com
Phone
18302430993
Organization name
Sichuan University
Department
State Key Laboratory of Biotherapy, West China Hospital, Sihcuan University.
Lab
Zhaoyinglan lab
Street address
No.17, Section 3, Renmin Nan Road
City
Chengdu
ZIP/Postal code
610041
Country
China
Platforms (1)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (39)
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GSM6756633
RNA_seq_A2780_Control_rep1
GSM6756634
RNA_seq_A2780_Control_rep2
GSM6756635
RNA_seq_A2780_Control_rep3
GSM6756636
RNA_seq_A2780_ZY0511_rep1
GSM6756637
RNA_seq_A2780_ZY0511_rep2
GSM6756638
RNA_seq_A2780_ZY0511_rep3
GSM6756639
RNA_seq_ES2_Control_rep1
GSM6756640
RNA_seq_ES2_Control_rep2
GSM6756641
RNA_seq_ES2_Control_rep3
GSM6756642
RNA_seq_ES2_ZY0511_rep1
GSM6756643
RNA_seq_ES2_ZY0511_rep2
GSM6756644
RNA_seq_ES2_ZY0511_rep3
GSM6756645
ATAC_seq_ES2_Control_rep1
GSM6756646
ATAC_seq_ES2_Control_rep2
GSM6756647
ATAC_seq_ES2_Control_rep3
GSM6756648
ATAC_seq_ES2_ZY0511_rep1
GSM6756649
ATAC_seq_ES2_ZY0511_rep2
GSM6756650
ATAC_seq_ES2_ZY0511_rep3
GSM6756651
ATAC_seq_ES2_shLSD1_rep1
GSM6756652
ATAC_seq_ES2_shLSD1_rep2
GSM6756653
ATAC_seq_ES2_shLSD1_rep3
GSM6756654
CUT&Tag_LSD1_ES2_Control_rep1
GSM6756655
CUT&Tag_LSD1_ES2_Control_rep2
GSM6756656
CUT&Tag_LSD1_ES2_Control_rep3
GSM6756657
CUT&Tag_LSD1_ES2_ZY0511_rep1
GSM6756658
CUT&Tag_LSD1_ES2_ZY0511_rep2
GSM6756659
CUT&Tag_LSD1_ES2_ZY0511_rep3
GSM6756660
CUT&Tag_H3K9me2_ES2_Control_rep1
GSM6756661
CUT&Tag_H3K9me2_ES2_Control_rep2
GSM6756662
CUT&Tag_H3K9me2_ES2_Control_rep3
GSM6756663
CUT&Tag_H3K9me2_ES2_shLSD1_rep1
GSM6756664
CUT&Tag_H3K9me2_ES2_shLSD1_rep2
GSM6756665
CUT&Tag_H3K9me2_ES2_shLSD1_rep3
GSM6756666
CUT&Tag_H3K4me2_ES2_Control_rep1
GSM6756667
CUT&Tag_H3K4me2_ES2_Control_rep2
GSM6756668
CUT&Tag_H3K4me2_ES2_Control_rep3
GSM6756669
CUT&Tag_H3K4me2_ES2_shLSD1_rep1
GSM6756670
CUT&Tag_H3K4me2_ES2_shLSD1_rep2
GSM6756671
CUT&Tag_H3K4me2_ES2_shLSD1_rep3
This SuperSeries is composed of the following SubSeries:
GSE218794
Impact of genetic depletion or pharmacological inhibition of LSD1 on gene expression in ovarian cancer cells [RNA-Seq]
GSE218795
Impact of genetic depletion or pharmacological inhibition of LSD1 on gene expression in ovarian cancer cells [ATAC-Seq]
GSE218796
Impact of genetic depletion or pharmacological inhibition of LSD1 on gene expression in ovarian cancer cells [CUT&Tag]
Relations
BioProject
PRJNA905462
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Supplementary file
Size
Download
File type/resource
GSE218798_RAW.tar
2.3 Gb
(http)
(custom)
TAR (of BW)
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