 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 20, 2023 |
| Title |
A naturally de novo-evolved gene contributes to rice grain shape difference between indica and japonica |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
To investigate the role of OsGSE9 in grain shape, we generate its overexpressing lines, and knockout lines by CRISPR/Cas9 system.
We then performed gene expression profiling analysis using data obtained from RNA-seq of the panicles of the WT and OsGSE9 transgenic lines
|
| |
|
| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for the panicles of WT and OsGSE9-overexpressing/knockout lines.
|
| |
|
| Contributor(s) |
Chen R, Yang Z |
| Citation(s) |
37737275 |
| |
| Submission date |
Nov 22, 2022 |
| Last update date |
Oct 03, 2023 |
| Contact name |
Rujia Chen |
| E-mail(s) |
rjchen@yzu.edu.cn
|
| Organization name |
Yangzhou unversity
|
| Street address |
Wenhui
|
| City |
Yangzhou |
| ZIP/Postal code |
225009 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL27660 |
Illumina NovaSeq 6000 (Oryza sativa) |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA904323 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE218565_FPKM-GSE9.xlsx |
4.5 Mb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...