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| Status |
Public on Sep 08, 2010 |
| Title |
Hoxc9 ChIP-seq in differentiating motor neurons |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
The expression of v5-tagged Hoxc9 is induced and ChIP-seq is used to profile genome-wide occupancy in differentiating motor neurons
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| Overall design |
The differentiation of ventral motor neurons is induced by treating embryonic stem cell cultures with retinoic acid and hedgehog signaling. Here, ChIP-seq is used to profile the genome-wide occupancy of Hoxc9 after five days of differentiation.
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| Contributor(s) |
Jung H, Lacombe J, Mazzoni EO, Liem KF, Grinstein J, Mahony S, Mukhopadhyay D, Gifford DK, Young RA, Anderson KV, Wichterle H, Dasen JS |
| Citation(s) |
20826310 |
| Submission date |
May 13, 2010 |
| Last update date |
May 15, 2019 |
| Contact name |
Shaun Mahony |
| E-mail(s) |
mahony@psu.edu
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| Phone |
814-865-3008
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| Organization name |
Penn State University
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| Department |
Biochemistry & Molecular Biology
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| Lab |
Shaun Mahony
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| Street address |
404 South Frear Bldg
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| City |
University Park |
| State/province |
PA |
| ZIP/Postal code |
16802 |
| Country |
USA |
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| Platforms (1) |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
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| Samples (2) |
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| Relations |
| SRA |
SRP002530 |
| BioProject |
PRJNA127253 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE21812.ES-MN_iHoxc6-V5_Day5plusDox.WCE_rep1.mm8.bw |
253.6 Mb |
(ftp)(http) |
BW |
| GSE21812.ES-MN_iHoxc9-V5_Day5plusDox.ChIP-seq_iHoxc9-V5_rep1.mm8.bw |
179.6 Mb |
(ftp)(http) |
BW |
| GSE21812_RAW.tar |
983.4 Mb |
(http)(custom) |
TAR (of TXT) |
| GSE21812_readme.txt |
244 b |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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