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Series GSE216294 Query DataSets for GSE216294
Status Public on Jan 09, 2023
Title A TDP-43 acetylation-mimic mutation that disrupts RNA-binding drives FTLD-like neurodegeneration in a mouse model of sporadic TDP-43 proteinopathy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary TDP-43 proteinopathies including frontotemporal lobar dementia (FTLD) and amyotrophic lateral sclerosis (ALS) are devastating neurodegenerative disorders characterized by aggregation and mislocalization of the nucleic-acid binding protein TDP-43 and subsequent neuronal dysfunction. Here, we developed an endogenous model of sporadic TDP-43 proteinopathy based on the principle that disease-associated TDP-43 acetylation at lysine 145 (K145) alters TDP-43 conformation, impairs its RNA-binding capacity, and induces downstream mis-regulation of target genes. Expression of aberrant acetylation-mimic TDP-43K145Q resulted in stress-induced phase-separated nuclear TDP-43 foci formation and loss-of-TDP-43-function in mouse primary neurons and human induced pluripotent stem cell (iPSC)-derived neurons. Aged mice harboring the single TDP-43K145Q mutation recapitulate several key hallmarks of neurodegenerative proteinopathies, including progressive TDP-43 phosphorylation and insolubility, cytoplasmic mis-localization, widespread transcriptomic and splicing alterations, and cognitive dysfunction. Our study supports a model in which aberrant TDP-43 acetylation drives neuronal dysfunction and cognitive decline through alternative splicing and transcription of genes important in synaptic plasticity and apoptosis, providing a new paradigm to interrogate FTLD disease mechanisms and uncover disease-modifying therapeutics.
 
Overall design Total RNAseq of mouse hippocampus and cortex, comparing TDP43-KQ vs TDP43-WT in 18-month-old male and female animals
 
Contributor(s) Simon JM, Necarsulmer JC, Cohen TJ
Citation(s) 37819053
Submission date Oct 21, 2022
Last update date Oct 24, 2023
Contact name Jeremy Simon
E-mail(s) jsimon@ds.dfci.harvard.edu, jeremy_simon@med.unc.edu
Organization name Dana-Farber Cancer Institute
Department Department of Data Science
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (20)
GSM6666144 Cortex_TDP43-WT_Female_rep1
GSM6666145 Cortex_TDP43-WT_Female_rep2
GSM6666146 Cortex_TDP43-WT_Female_rep3
Relations
BioProject PRJNA892938

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Supplementary file Size Download File type/resource
GSE216294_BatchCorrectedVST.txt.gz 2.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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