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Series GSE216050 Query DataSets for GSE216050
Status Public on Mar 27, 2024
Title DNA methylation as a therapeutic target in RB1 deficient and neuroendocrine prostate cancer and rational co-targeting with B7-H3 [RRBS]
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Aberrant DNA methylation has been implicated as a key driver of prostate cancer lineage plasticity and histologic transformation to neuroendocrine prostate cancer (NEPC). DNA methyltransferases (DNMT) are highly expressed, and global DNA methylation levels are elevated in NEPC. We identified that deletion of DNMT genes decreases expression of neuroendocrine lineage markers and markedly reduced NEPC tumor development and metastasis in vivo. Decitabine, a global DNMT inhibitor, significantly attenuated tumor growth in NEPC patient-derived xenograft (PDX) models, as well as RB1-deficient castration-resistant prostate adenocarcinoma (CRPC) models compared with RB1-proficient CRPC. We further discovered that DNMT inhibition increased expression of B7-H3, an emerging druggable target, via demethylation of B7-H3 CpG islands. We tested DS-7300a, a novel antibody-drug conjugate (ADC) targeting B7-H3, alone and in combination with decitabine. There was potent single agent antitumor activity of DS-7300a in both CRPC and NEPC models bearing high expression of B7-H3. In B7-H3 low models, combination therapy of decitabine plus DS-7300a resulted in a synergistic response. Overall, we report that DNMT inhibition is a novel therapeutic target for NEPC and RB1-deficient CRPC and may sensitize B7-H3-low prostate cancer to the ADC DS-7300a through increasing target expression. NEPC and RB1-deficient CRPC represent prostate cancer subgroups with poor prognosis. The development of novel biomarker-driven therapeutic strategies for this population may ultimately help improve patient outcomes.
 
Overall design DNA methylation statuses in prostate cancer xenograft models were analyzed using reduced representation of bisulfite sequencing (RRBS).
 
Contributor(s) Yamada Y, Beltran H
Citation(s) 37967200
Submission date Oct 18, 2022
Last update date Mar 28, 2024
Contact name Yasutaka Yamada
E-mail(s) yasutaka_yamada@dfci.harvard.edu
Phone 8574988355
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Lab Beltran
Street address 44 Binney street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (6)
GSM6657904 DNA methylation in PM154 control
GSM6657905 DNA methylation in PM154 decitabine treated
GSM6657906 DNA methylation in PM12 control
This SubSeries is part of SuperSeries:
GSE216054 DNA methylation as a therapeutic target in RB1 deficient and neuroendocrine prostate cancer and rational co-targeting with B7-H3
Relations
BioProject PRJNA891769

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216050_RAW.tar 266.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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