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Series GSE215916 Query DataSets for GSE215916
Status Public on Oct 24, 2022
Title Effect of haptoglobin (purified from human serum) on gene expression in monocyte-derived macrophages.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Haptoglobin is a major serum protein that sequesters free hemoglobin. Moreover, haptoglobin regulates the inflammatory response in the absence of hemoglobin. Conflicting functional outcomes are reported, whereas involvement of NFκB is suggested consistently. Our data indicate that purified haptoglobin induces NFκB-dependent transcription through toll-like receptor 4. Notably, haptoglobin itself is dispensable for this effect. We show here that haptoglobin binds lipopolysaccharides from different bacterial species with micromolar affinities. This finding explains previous divergent observations. Pro-inflammatory responses elicited by purified haptoglobin are caused by heterogeneous lipopolysaccharides associated with the protein. Given its abundance in human serum, haptoglobin constitutes a buffer for serum-borne lipopolysaccharide. Restricted lipopolysaccharide availability dampens inflammatory responses. Concordantly, NFκB activation in primary macrophages is delayed relative to stimulation with pure lipopolysaccharide. Our findings warrant evaluation of therapeutic benefits of haptoglobin for non-hemolytic conditions as well as re-evaluation of purification strategies and will furthermore allow to disentangle mechanisms of haptoglobin-dependent immunoregulation.
 
Overall design Monocyte-derived macrophages from three healthy female donors were treated with vehicle, 25 µg/ml mixed-type haptoglobin, or haptoglobin and 50 µM arachidonic acid for 2, 4, 6, and 8 hours for comparative RNA-seq.
 
Contributor(s) Großmann J, Nist A, Stiewe T, Adhikary T, Chung HR
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Submission date Oct 17, 2022
Last update date Oct 27, 2022
Contact name Ho Ryun Chung
E-mail(s) ho.chung@staff.uni-marburg.de
Organization name Philipps University of Marburg
Department Institute for Medical Bioinformatics and Biostatistics
Street address Hans-Meerwein-Straße 6
City Marburg
ZIP/Postal code 35043
Country Germany
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (35)
GSM6647336 MDMs control 2 h biol rep 1
GSM6647337 MDMs HP 2 h biol rep 1
GSM6647338 MDMs HP+AA 2 h biol rep 1
Relations
BioProject PRJNA891280

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Supplementary file Size Download File type/resource
GSE215916_RAW.tar 71.0 Mb (http)(custom) TAR (of SF)
GSE215916_analysis-20200827.R.gz 1.5 Kb (ftp)(http) R
GSE215916_diffGenes.HP_vs_control.tp2.tsv.gz 35.5 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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