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Series GSE213745 Query DataSets for GSE213745
Status Public on Aug 04, 2024
Title Disruption of the intellectual disability-linked gene Hs6st2 in mice decreases heparan sulfate 6-O-sulfation in the brain and impairs memory
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Heparan sulfate (HS) is a linear polysaccharide that plays a key role in cellular signaling networks. HS functions are regulated by its 6-O-sulfation, which is catalyzed by HS 6-O-sulfotransferases (HS6STs). Although mutations in HS6ST2 cause intellectual disability in human patients, the role and molecular mechanisms of HS6ST2 in the adult mammalian brain remain unknown. Here we found that the brain specifically expresses the long isoform of Hs6st2, which encodes a protein that retains the sulfotransferase domain and acquires a novel sub-structure. To determine the role of Hs6st2 in the brain, we carried out a series of behavioral and molecular assessments on the Hs6st2 knockout mice. We found that Hs6st2 knockout mice exhibit high body weight, hyperactivity, and memory-related deficits. To determine the molecular mechanisms underlying these deficits, we carried out strong anion exchange-high performance liquid chromatography and RNA sequencing. We found that knockout of Hs6st2 decreases HS 6-O-sulfation levels in the brain and impairs transcriptome in the hippocampus. We also found that the transcriptome changes are enriched in genes involved in ribosome and protein translation pathways, which are likely due to the downregulation of the fibroblast growth factor signaling. Together, our study demonstrates the role and molecular mechanisms of Hs6st2 in the adult mammalian brain, which provides new insights into the role of HS in brain health and disease.
 
Overall design In this study, we analyzed the splicing patterns of Hs6st2 in different mouse tissues and investigated the protein structures of the long and short Hs6st2 isoforms using machine learning-based predictions. We also used cryo-recovery approach to re-generate the Hs6st2 knockout mice (KO) and carried out a series of behavioral and molecular assessments, including behavioral tests, strong anion exchange-high performance liquid chromatography (SAX-HPLC), and RNA sequencing (RNA-seq).
 
Contributor(s) Moon S, Zhao J
Citation(s) 38015989
Submission date Sep 20, 2022
Last update date Nov 03, 2024
Contact name Ying-Tao Zhao
E-mail(s) yzhao47@nyit.edu
Organization name New York Institute of Technology
Department Biomedical Sciences
Lab Jerry Zhao Lab
Street address Riland building, Room 024 Northern Boulevard, P.O. Box 8000
City Old Westbury
State/province NY
ZIP/Postal code 11568
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (15)
GSM6593358 hippocampus_WT_Rep1
GSM6593359 hippocampus_WT_Rep2
GSM6593360 hippocampus_WT_Rep3
Relations
BioProject PRJNA882373

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213745_RAW.tar 2.1 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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