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GEO accession:
Series GSE213360
Query DataSets for GSE213360
Status
Public on Jun 13, 2024
Title
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma
Organisms
Danio rerio
;
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Sep 14, 2022
Last update date
Jun 14, 2024
Contact name
Leonard Zon
E-mail(s)
zon@enders.tch.harvard.edu
Organization name
Boston Children's Hospital
Department
Oncology/Hematology
Street address
1 Blackfan Circle
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (3)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL20828
Illumina NextSeq 500 (Danio rerio)
GPL21741
Illumina HiSeq 4000 (Danio rerio)
Samples (40)
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GSM6578998
Vehicle Control A375 INPUT 6.11.18
GSM6578999
TGFB1 stimulated A375 INPUT 6.11.18
GSM6579000
Vehicle Control A375 H3K27ac 6.11.18
GSM6579001
Vehicle Control A375 Smad2/3 6.11.18
GSM6579002
TGFB1 stimulated A375 H3K27ac 6.11.18
GSM6579003
TGFB1 stimulated A375 Smad2/3 6.11.18
GSM6579004
Vehicle Control A375 INPUT 7.17.18
GSM6579005
TGFB1 stimulated A375 INPUT 7.17.18
GSM6579006
Vehicle Control A375 MITF 7.17.18
GSM6579007
TGFB1 stimulated A375 MITF 7.17.18
GSM6579008
Vehicle Control A375 Input 11.18.20
GSM6579009
TGFB1 stimulated A375 Input 11.18.20
GSM6579010
Vehicle Control A375 ATF3 11.18.20
GSM6579011
Vehicle Control A375 JUNB 11.18.20
GSM6579012
TGFB1 stimulated A375 ATF3 11.18.20
GSM6579013
TGFB1 stimulated A375 JUNB 11.18.20
GSM6579014
Vehicle Control treated A375 Replicate 1
GSM6579015
Vehicle Control treated A375 Replicate 2
GSM6579016
Vehicle Control treated A375 Replicate 3
GSM6579017
10ng/mL TGFB1 treated A375 Replicate 1
GSM6579018
10ng/mL TGFB1 treated A375 Replicate 2
GSM6579019
10ng/mL TGFB1 treated A375 Replicate 3
GSM6579020
Vehicle Control treated ZMEL1 Replicate 1
GSM6579021
Vehicle Control treated ZMEL1 Replicate 2
GSM6579022
Vehicle Control treated ZMEL1 Replicate 3
GSM6579023
10ng/mL TGFB1 treated ZMEL1 Replicate 1
GSM6579024
10ng/mL TGFB1 treated ZMEL1 Replicate 2
GSM6579025
10ng/mL TGFB1 treated ZMEL1 Replicate 3
GSM6580960
TIE:EGFP MCR:MCS Tumor 1 GFP+ #1
GSM6580961
TIE:EGFP MCR:MCS Tumor 1 GFP+ #2
GSM6580962
TIE:EGFP MCR:MCS Tumor 1 mCherry+;GFP-
GSM6580963
TIE:EGFP MCR:MCS Tumor 1 GFP+ #3
GSM6580964
TIE:EGFP MCR:SATB2 Tumor 1 GFP+ #1
GSM6580965
TIE:EGFP MCR:SATB2 Tumor 1 GFP+ #2
GSM6580966
TIE:EGFP MCR:SATB2 Tumor 1 GFP-/mCherry+
GSM6580967
TIE:EGFP MCR:SATB2 Tumor 1 GFP+ #3
GSM6580968
TIE:EGFP MCR:MCS Tumor 2 GFP+ #1
GSM6580969
TIE:EGFP MCR:MCS Tumor 2 GFP+ #2
GSM6580970
TIE:EGFP MCR:MCS Tumor 2 GFP-/mCherry+
GSM6580971
TIE:EGFP MCR:MCS Tumor 2 GFP+ #3
This SuperSeries is composed of the following SubSeries:
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More...
GSE213326
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma [ChIP-seq]
GSE213327
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma [RNA-seq, A375]
GSE213328
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma [RNA-seq, ZMEL]
GSE213359
A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma [SORT-seq]
Relations
BioProject
PRJNA880593
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE213360_RAW.tar
21.1 Mb
(http)
(custom)
TAR (of NARROWPEAK, TSV)
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