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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 12, 2023 |
| Title |
SETD2 loss in renal epithelial cells drives epithelial to mesenchymal transition in a TGFβ-independent manner |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Web link |
http:// https://doi.org/10.1002/1878-0261.13487
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| Citation(s) |
37418588 |
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| Submission date |
Sep 13, 2022 |
| Last update date |
Aug 01, 2023 |
| Contact name |
Keith D Robertson |
| E-mail(s) |
robertson.keith@mayo.edu
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| Phone |
507-266-4886
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| Organization name |
Mayo Clinic
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| Department |
Molecular Pharmacology & Experimental Therapeutics
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| Lab |
Epigenetic Etiology of Human Disease Laboratory
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| Street address |
200 First Street SW, Stabile 12-70
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| City |
Rochester |
| State/province |
MN |
| ZIP/Postal code |
55905 |
| Country |
USA |
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| Platforms (2) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (57)
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| GSM6577346 |
RPTEC cells, ATAC, KO1, rep1 |
| GSM6577347 |
RPTEC cells, ATAC, KO1, rep2 |
| GSM6577348 |
RPTEC cells, ATAC, KO1, rep3 |
| GSM6577349 |
RPTEC cells, ATAC, KO2, rep1 |
| GSM6577350 |
RPTEC cells, ATAC, KO2, rep2 |
| GSM6577351 |
RPTEC cells, ATAC, KO2, rep3 |
| GSM6577352 |
RPTEC cells, ATAC, Rescue1, rep1 |
| GSM6577354 |
RPTEC cells, ATAC, Rescue1, rep2 |
| GSM6577355 |
RPTEC cells, ATAC, Rescue1, rep3 |
| GSM6577356 |
RPTEC cells, ATAC, Rescue2, rep1 |
| GSM6577357 |
RPTEC cells, ATAC, Rescue2, rep2 |
| GSM6577358 |
RPTEC cells, ATAC, Rescue2, rep3 |
| GSM6577616 |
RPTEC cells, H3K36me3, WT, rep1 |
| GSM6577617 |
RPTEC cells, H3K36me3, WT, rep2 |
| GSM6577618 |
RPTEC cells, H3K36me3, KO1, rep1 |
| GSM6577620 |
RPTEC cells, H3K36me3, KO1, rep2 |
| GSM6577621 |
RPTEC cells, H3K36me3, KO2, rep1 |
| GSM6577622 |
RPTEC cells, H3K36me3, KO2, rep2 |
| GSM6577623 |
RPTEC cells, H3K36me3, Rescue1, rep1 |
| GSM6577624 |
RPTEC cells, H3K36me3, Rescue1, rep2 |
| GSM6577625 |
RPTEC cells, H3K36me3, Rescue2, rep1 |
| GSM6577626 |
RPTEC cells, H3K36me3, Rescue2, rep2 |
| GSM6577628 |
RPTEC cells, input, WT, rep1 |
| GSM6577629 |
RPTEC cells, input, WT, rep2 |
| GSM6577630 |
RPTEC cells, input, KO1, rep1 |
| GSM6577631 |
RPTEC cells, input, KO1, rep2 |
| GSM6577632 |
RPTEC cells, input, KO2, rep1 |
| GSM6577633 |
RPTEC cells, input, KO2, rep2 |
| GSM6577634 |
RPTEC cells, H3K36me3, Rescue1, input, rep1 |
| GSM6577635 |
RPTEC cells, H3K36me3, Rescue1, input, rep2 |
| GSM6577636 |
RPTEC cells, H3K36me3, Rescue2, input, rep1 |
| GSM6577638 |
RPTEC cells, H3K36me3, Rescue2, input, rep2 |
| GSM6577873 |
RPTEC cells, WT, untreated, rep1 |
| GSM6577874 |
RPTEC cells, WT, untreated, rep2 |
| GSM6577876 |
RPTEC cells, WT, TGFβ-treated, 72h, rep1 |
| GSM6577877 |
RPTEC cells, WT, TGFβ-treated, 72h, rep2 |
| GSM6577878 |
RPTEC cells, KO1, untreated, rep1 |
| GSM6577879 |
RPTEC cells, KO1, untreated, rep2 |
| GSM6577880 |
RPTEC cells, KO2, untreated, rep1 |
| GSM6577881 |
RPTEC cells, KO2, untreated, rep2 |
| GSM6577883 |
RPTEC cells, KO2_Rescue, untreated, rep1 |
| GSM6577884 |
RPTEC cells, KO2_Rescue, untreated, rep2 |
| GSM6577885 |
RPTEC cells, Rescue1, rep1 |
| GSM6577886 |
RPTEC cells, Rescue1, rep2 |
| GSM6577887 |
RPTEC cells, Rescue2, rep1 |
| GSM6577889 |
RPTEC cells, Rescue2, rep2 |
| GSM6577890 |
RPTEC cells, WT, lentiviral transduction, empty vector, rep1 |
| GSM6577891 |
RPTEC cells, WT, lentiviral transduction, empty vector, rep2 |
| GSM6577892 |
RPTEC cells, WT, lentiviral transduction, OCT2, rep1 |
| GSM6577893 |
RPTEC cells, WT, lentiviral transduction, OCT2, rep2 |
| GSM6577894 |
RPTEC cells, WT, lentiviral transduction, PRRX1, rep1 |
| GSM6577896 |
RPTEC cells, WT, lentiviral transduction, PRRX1, rep2 |
| GSM6577897 |
RPTEC cells, WT, lentiviral transduction, SOX2, rep1 |
| GSM6577898 |
RPTEC cells, WT, lentiviral transduction, SOX2, rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE213256 |
SETD2 loss in renal epithelial cells drives epithelial to mesenchymal transition in a TGFβ-independent manner [ATAC-Seq] |
| GSE213257 |
SETD2 loss in renal epithelial cells drives epithelial to mesenchymal transition in a TGFβ-independent manner [ChIP-Seq] |
| GSE213258 |
SETD2 loss in renal epithelial cells drives epithelial to mesenchymal transition in a TGFβ-independent manner [RNA-Seq] |
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| Relations |
| BioProject |
PRJNA880278 |
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