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GEO accession:
Series GSE212950
Query DataSets for GSE212950
Status
Public on Jan 23, 2023
Title
Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
36869380
Submission date
Sep 08, 2022
Last update date
Oct 17, 2023
Contact name
Robert Blelloch
E-mail(s)
robert.blelloch@ucsf.edu
Organization name
UCSF
Street address
35 Medical Center Way
City
San Francisco
State/province
CA
ZIP/Postal code
94122
Country
USA
Platforms (3)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL28457
DNBSEQ-G400 (Mus musculus)
Samples (57)
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GSM6564306
Naive_ESC_WT_ATAC_rep1
GSM6564307
Naive_ESC_WT_ATAC_rep2
GSM6564308
Formative_ESC_WT_ATAC_rep1
GSM6564309
Formative_ESC_WT_ATAC_rep2
GSM6564310
Naive_ESC_WT_H3K27a_rep1
GSM6564311
Naive_ESC_WT_H3K27a_rep2
GSM6564312
Naive_ESC_MLL3KO_MLL4KO_H3K27a_rep1
GSM6564313
Naive_ESC_MLL3KO_MLL4KO_H3K27a_rep2
GSM6564314
Formative_ESC_WT_H3K27a_rep1
GSM6564315
Formative_ESC_WT_H3K27a_rep2
GSM6564316
Formative_ESC_MLL3KO_MLL4KO_H3K27a_rep1
GSM6564317
Formative_ESC_MLL3KO_MLL4KO_H3K27a_rep2
GSM6564318
Naive_ESC_WT_rep1
GSM6564319
Naive_ESC_WT_rep2
GSM6564320
Naive_ESC_WT_rep3
GSM6564321
Naive_ESC_MLL3KO_MLL4fl_rep1
GSM6564322
Naive_ESC_MLL3KO_MLL4fl_rep2
GSM6564323
Naive_ESC_MLL3KO_MLL4fl_rep3
GSM6564324
Naive_ESC_MLL3KO_MLL4KO_rep1
GSM6564325
Naive_ESC_MLL3KO_MLL4KO_rep2
GSM6564326
Naive_ESC_MLL3KO_MLL4KO_rep3
GSM6564327
Naive_ESC_MLL3CD_MLL4CD_rep1
GSM6564328
Naive_ESC_MLL3CD_MLL4CD_rep2
GSM6564329
Naive_ESC_MLL3CD_MLL4CD_rep3
GSM6564330
Formative_ESC_WT_rep1
GSM6564331
Formative_ESC_WT_rep2
GSM6564332
Formative_ESC_WT_rep3
GSM6564333
Formative_ESC_MLL3KO_MLL4fl_rep1
GSM6564334
Formative_ESC_MLL3KO_MLL4fl_rep2
GSM6564335
Formative_ESC_MLL3KO_MLL4fl_rep3
GSM6564336
Formative_ESC_MLL3KO_MLL4KO_rep1
GSM6564337
Formative_ESC_MLL3KO_MLL4KO_rep2
GSM6564338
Formative_ESC_MLL3KO_MLL4KO_rep3
GSM6564339
Formative_ESC_MLL3CD_MLL4CD_rep1
GSM6564340
Formative_ESC_MLL3CD_MLL4CD_rep2
GSM6564341
Formative_ESC_MLL3CD_MLL4CD_rep3
GSM6564342
Naive_ESC_WT_H3K4m1_rep1
GSM6564343
Naive_ESC_WT_H3K4m1_rep2
GSM6564344
Naive_ESC_MLL3KO_MLL4fl_H3K4m1_rep1
GSM6564345
Naive_ESC_MLL3KO_MLL4fl_H3K4m1_rep2
GSM6564346
Naive_ESC_MLL3KO_MLL4KO_H3K4m1_rep1
GSM6564347
Naive_ESC_MLL3KO_MLL4KO_H3K4m1_rep2
GSM6564348
Naive_ESC_MLL3CD_MLL4CD_H3K4m1_rep1
GSM6564349
Naive_ESC_MLL3CD_MLL4CD_H3K4m1_rep2
GSM6564350
Formative_ESC_WT_H3K4m1_rep1
GSM6564351
Formative_ESC_WT_H3K4m1_rep2
GSM6564352
Formative_ESC_MLL3KO_MLL4fl_H3K4m1_rep1
GSM6564353
Formative_ESC_MLL3KO_MLL4fl_H3K4m1_rep2
GSM6564354
Formative_ESC_MLL3KO_MLL4KO_H3K4m1_rep1
GSM6564355
Formative_ESC_MLL3KO_MLL4KO_H3K4m1_rep2
GSM6564356
Formative_ESC_MLL3CD_MLL4CD_H3K4m1_rep1
GSM6564357
Formative_ESC_MLL3CD_MLL4CD_H3K4m1_rep2
GSM6564358
Naive_ESC_WT_IgG
GSM6564359
Formative_ESC_WT_MLL4_rep1
GSM6564360
Formative_ESC_WT_MLL4_rep2
GSM6564361
Formative_ESC_MLL3KO_MLL4KO_MLL4_rep1
GSM6564362
Formative_ESC_MLL3KO_MLL4KO_MLL4_rep2
This SuperSeries is composed of the following SubSeries:
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GSE212946
Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation [ATAC-SEq]
GSE212947
Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation [CUT&TAG]
GSE212948
Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation [RNA-Seq]
GSE212949
Loss of MLL3/4 decouples enhancer H3K4 monomethylation, H3K27 acetylation, and gene activation [CUT&RUN]
Relations
BioProject
PRJNA878502
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Supplementary data files not provided
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