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GEO accession:
Series GSE212847
Query DataSets for GSE212847
Status
Public on Jul 07, 2023
Title
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37098340
,
37952155
Submission date
Sep 07, 2022
Last update date
Feb 15, 2024
Contact name
Nicole Hamagami
E-mail(s)
nicoleh@wustl.edu
Organization name
Washington University in St. Louis
Department
Neuroscience
Lab
Harrison Gabel
Street address
4487 McPherson Ave. Unit C
City
Saint Louis
State/province
MO
ZIP/Postal code
63108
Country
USA
Platforms (2)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (101)
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GSM6556535
ChIP_cortex_2week_H3K36me2_1
GSM6556536
ChIP_cortex_2week_H3K36me2_2
GSM6556537
ChIP_cortex_2week_H3K36me2_3
GSM6556538
ChIP_cortex_2week_DNMT3A_1
GSM6556539
ChIP_cortex_2week_DNMT3A_2
GSM6556540
ChIP_cortex_2week_H3K4me1_1
GSM6556541
ChIP_cortex_2week_H3K4me1_2
GSM6556542
ChIP_cortex_2week_H3K4me2_1
GSM6556543
ChIP_cortex_2week_H3K4me2_2
GSM6556544
InputB1
GSM6556545
InputB2
GSM6556546
Input_A1
GSM6556547
Input_A2
GSM6556548
Input-2wk_GTCCGC
GSM6556549
ChIP_DIV12_Ctrl-sh_H3K36me2_biorep1
GSM6556550
ChIP_DIV12_Ctrl-sh_H3K36me2_biorep2
GSM6556551
ChIP_DIV12_Ctrl-sh_DNMT3A_biorep1
GSM6556552
ChIP_DIV12_Ctrl-sh_DNMT3A_biorep2
GSM6556553
ChIP_DIV12_Ctrl-sh_Input_biorep1
GSM6556554
ChIP_DIV12_Ctrl-sh_Input_biorep2
GSM6556555
ChIP_DIV12_NSD1-sh1_H3K36me2_biorep1
GSM6556556
ChIP_DIV12_NSD1-sh1_H3K36me2_biorep2
GSM6556557
ChIP_DIV12_NSD1-sh2_H3K36me2_biorep1
GSM6556558
ChIP_DIV12_NSD1-sh2_H3K36me2_biorep2
GSM6556559
ChIP_DIV12_NSD1-sh1_DNMT3A_biorep1
GSM6556560
ChIP_DIV12_NSD1-sh1_DNMT3A_biorep2
GSM6556561
ChIP_DIV12_NSD1-sh2_DNMT3A_biorep1
GSM6556562
ChIP_DIV12_NSD1-sh2_DNMT3A_biorep2
GSM6556563
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_biorep1
GSM6556564
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_biorep2
GSM6556565
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_biorep3
GSM6556566
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_biorep4
GSM6556567
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_biorep5
GSM6556568
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_biorep1
GSM6556569
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_biorep2
GSM6556570
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_biorep3
GSM6556571
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_biorep4
GSM6556572
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_biorep5
GSM6556573
ChIPRx_2wk_ctx_nsd1_ctrl_DNMT3A_biorep1
GSM6556574
ChIPRx_2wk_ctx_nsd1_ctrl_DNMT3A_biorep2
GSM6556575
ChIPRx_2wk_ctx_nsd1_ctrl_DNMT3A_biorep3
GSM6556576
ChIPRx_2wk_ctx_nsd1_ctrl_DNMT3A_biorep4
GSM6556577
ChIPRx_2wk_ctx_nsd1_ctrl_DNMT3A_biorep5
GSM6556578
ChIPRx_2wk_ctx_nsd1_cKO_DNMT3A_biorep1
GSM6556579
ChIPRx_2wk_ctx_nsd1_cKO_DNMT3A_biorep2
GSM6556580
ChIPRx_2wk_ctx_nsd1_cKO_DNMT3A_biorep3
GSM6556581
ChIPRx_2wk_ctx_nsd1_cKO_DNMT3A_biorep4
GSM6556582
ChIPRx_2wk_ctx_nsd1_cKO_DNMT3A_biorep5
GSM6556583
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me3_biorep1
GSM6556584
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me3_biorep2
GSM6556585
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me3_biorep3
GSM6556586
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me3_biorep4
GSM6556587
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me3_biorep5
GSM6556588
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me3_biorep1
GSM6556589
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me3_biorep2
GSM6556590
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me3_biorep3
GSM6556591
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me3_biorep4
GSM6556592
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me3_biorep5
GSM6556593
ChIPRx_2wk_ctx_nsd1_ctrl_Input_biorep1
GSM6556594
ChIPRx_2wk_ctx_nsd1_ctrl_Input_biorep2
GSM6556595
ChIPRx_2wk_ctx_nsd1_ctrl_Input_biorep3
GSM6556596
ChIPRx_2wk_ctx_nsd1_ctrl_Input_biorep4
GSM6556597
ChIPRx_2wk_ctx_nsd1_ctrl_Input_biorep5
GSM6556598
ChIPRx_2wk_ctx_nsd1_cKO_Input_biorep1
GSM6556599
ChIPRx_2wk_ctx_nsd1_cKO_Input_biorep2
GSM6556600
ChIPRx_2wk_ctx_nsd1_cKO_Input_biorep3
GSM6556601
ChIPRx_2wk_ctx_nsd1_cKO_Input_biorep4
GSM6556602
ChIPRx_2wk_ctx_nsd1_cKO_Input_biorep5
GSM6556603
RNA_8wk_ctx_nsd1_ctrl_biorep1
GSM6556604
RNA_8wk_ctx_nsd1_ctrl_biorep2
GSM6556605
RNA_8wk_ctx_nsd1_ctrl_biorep3
GSM6556606
RNA_8wk_ctx_nsd1_ctrl_biorep4
GSM6556607
RNA_8wk_ctx_nsd1_ctrl_biorep5
GSM6556608
RNA_8wk_ctx_nsd1_ctrl_biorep6
GSM6556609
RNA_8wk_ctx_nsd1_cKO_biorep1
GSM6556610
RNA_8wk_ctx_nsd1_cKO_biorep2
GSM6556611
RNA_8wk_ctx_nsd1_cKO_biorep3
GSM6556612
RNA_8wk_ctx_nsd1_cKO_biorep4
GSM6556613
RNA_8wk_ctx_nsd1_cKO_biorep5
GSM6556614
RNA_8wk_ctx_nsd1_cKO_biorep6
GSM6556615
WGBS_8wk_ctx_nsd1_ctrl_biorep1
GSM6556616
WGBS_8wk_ctx_nsd1_ctrl_biorep2
GSM6556617
WGBS_8wk_ctx_nsd1_ctrl_biorep3
GSM6556618
WGBS_8wk_ctx_nsd1_cKO_biorep1
GSM6556619
WGBS_8wk_ctx_nsd1_cKO_biorep2
GSM6556620
WGBS_8wk_ctx_nsd1_cKO_biorep3
GSM6556621
WGBS_DIV18_nsd1_Ctrl-sh_biorep1_A
GSM6556622
WGBS_DIV18_nsd1_Ctrl-sh_biorep1_B
GSM6556623
WGBS_DIV18_nsd1_Ctrl-sh_biorep2
GSM6556624
WGBS_DIV18_NSD1-sh1_biorep1
GSM6556625
WGBS_DIV18_NSD1-sh1_biorep2
GSM6556626
WGBS_DIV18_NSD1-sh2_biorep1
GSM6556627
WGBS_DIV18_NSD1-sh2_biorep2
GSM7035869
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_ab2_biorep1
GSM7035870
ChIPRx_2wk_ctx_nsd1_ctrl_H3K36me2_ab2_biorep2
GSM7035871
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_ab2_biorep1
GSM7035872
ChIPRx_2wk_ctx_nsd1_cKO_H3K36me2_ab2_biorep2
GSM7035873
ChIPRx_2wk_ctx_nsd1_ctrl_Input_ab2_biorep1
GSM7035874
ChIPRx_2wk_ctx_nsd1_ctrl_Input_ab2_biorep2
GSM7035875
ChIPRx_2wk_ctx_nsd1_cKO_Input_ab2_biorep1
GSM7035876
ChIPRx_2wk_ctx_nsd1_cKO_Input_ab2_biorep2
This SuperSeries is composed of the following SubSeries:
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GSE212841
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [ChIP-seq in vivo]
GSE212842
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [ChIP-seq vitro]
GSE212843
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [ChIP Rx]
GSE212844
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [RNA-seq]
GSE212845
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [WGBS in vivo]
GSE212846
NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [WGBS in vitro]
Relations
BioProject
PRJNA877631
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