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GEO accession:
Series GSE212524
Query DataSets for GSE212524
Status
Public on Aug 18, 2024
Title
Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
http://DOI: 10.1038/s44161-024-00546-5
Contributor(s)
Cordero Henriquez JD
,
Dobreva G
,
Tetik-Elsherbiny N
Citation(s)
39322771
Submission date
Sep 01, 2022
Last update date
Oct 09, 2024
Contact name
Gergana Dobreva
E-mail(s)
Gergana.Dobreva@medma.uni-heidelberg.de
Organization name
Medical Faculty Mannheim/University of Heidelberg
Department
Cardiovascular Genomics and Epigenomics
Lab
AG Dobreva
Street address
Ludolf-Krehl-Str. 7-11
City
Mannheim
State/province
Baden Württemberg
ZIP/Postal code
68167
Country
Germany
Platforms (3)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL23227
BGISEQ-500 (Homo sapiens)
GPL23479
BGISEQ-500 (Mus musculus)
Samples (50)
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GSM6533907
P7-Retinal-EC-Rnf20-Ctrl-RNAseq-Rep1
GSM6533908
P7-Retinal-EC-Rnf20-Ctrl-RNAseq-Rep2
GSM6533909
P7-Retinal-EC-Rnf20-Ctrl-RNAseq-Rep3
GSM6533910
P7-Retinal-EC-Rnf20-KO-RNAseq-Rep1
GSM6533911
P7-Retinal-EC-Rnf20-KO-RNAseq-Rep2
GSM6533912
P7-Retinal-EC-Rnf20-KO-RNAseq-Rep3
GSM6533947
01HUVEC-siCtr1-60h
GSM6533948
01HUVEC-siCtr2-60h
GSM6533949
01HUVEC-siCtr3-60h
GSM6533950
01HUVEC-siRNF20-1-60h
GSM6533951
01HUVEC-siRNF20-2-60h
GSM6533952
01HUVEC-siRNF20-3-60h
GSM6533953
P7-Retina-EC-ATACseq-CTR-rep1
GSM6533954
P7-Retina-EC-ATACseq-KO-rep2
GSM6533955
P7-Retina-EC-ATACseq-CTR-rep2
GSM6533956
P7-Retina-EC-ATACseq-KO-rep1
GSM7060764
03HUVEC_POL2_IP_siCTR_rep1
GSM7060765
03HUVEC_POL2_IP_siCTR_rep2
GSM7060766
03HUVEC_POL2_IP_siCTR_rep3
GSM7060767
04HUVEC_POL2_IP_siRNF20_rep1
GSM7060768
04HUVEC_POL2_IP_siRNF20_rep2
GSM7060769
04HUVEC_POL2_IP_siRNF20_rep3
GSM7060770
05HUVEC_INPUT_siCTR_rep1
GSM7060771
05HUVEC_INPUT_siCTR_rep2
GSM7060772
05HUVEC_INPUT_siCTR_rep3
GSM7060773
06HUVEC_INPUT_siRNF20_rep1
GSM7060774
06HUVEC_INPUT_siRNF20_rep2
GSM7060775
06HUVEC_INPUT_siRNF20_rep3
GSM7877381
H2Bub_IP_siCTR_HUVEC_r1_ChIP_seq
GSM7877382
H2Bub_IP_siCTR_HUVEC_r2_ChIP_seq
GSM7877383
H2Bub_IP_siCTR_HUVEC_r3_ChIP_seq
GSM7877384
H2Bub_IP_siRNF20_HUVEC_r1_ChIP_seq
GSM7877385
H2Bub_IP_siRNF20_HUVEC_r2_ChIP_seq
GSM7877386
H2Bub_IP_siRNF20_HUVEC_r3_ChIP_seq
GSM7877387
HUVEC_siCTR_60h_ATAC_r1
GSM7877388
HUVEC_siCTR_60h_ATAC_r2
GSM7877389
HUVEC_siCTR_60h_ATAC_r3
GSM7877390
HUVEC_siCTR_60h_ATAC_r4
GSM7877391
HUVEC_siRN20_60h_ATAC_r1
GSM7877392
HUVEC_siRN20_60h_ATAC_r2
GSM7877393
HUVEC_siRN20_60h_ATAC_r3
GSM7877394
HUVEC_siRN20_60h_ATAC_r4
GSM8291882
HUV_PLKO_Ctr_P2t_IP_ChiP_r1
GSM8291883
HUV_PLKO_Ctr_P2t_IP_ChiP_r2
GSM8291884
HUV_ERG_OE_P2t_IP_ChiP_r1
GSM8291885
HUV_ERG_OE_P2t_IP_ChiP_r2
GSM8291886
HUV_PLKO_Ctr_Inp_r1
GSM8291887
HUV_PLKO_Ctr_Inp_r2
GSM8291888
HUV_ERG_OE_Inp_r1
GSM8291889
HUV_ERG_OE_Inp_r2
This SuperSeries is composed of the following SubSeries:
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GSE212520
Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis [Rnf20_CD31_RNA_seq]
GSE212522
Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis [02RNF20_Huvec]
GSE212523
Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis [03ATAC_seq-Retina]
GSE225943
Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis [ChIP-seq]
GSE246808
RNF20-mediated transcriptional pausing and alternative splicing of pro-angiogenic genes orchestrate vessel growth [04Po2t_OE_ERG_STAT3_ChIP_HUV]
GSE246810
RNF20-mediated transcriptional pausing and alternative splicing of pro-angiogenic genes orchestrate vessel growth [05H2Bub_siRNF20_ChIP_seq_HUV]
GSE246811
RNF20-mediated transcriptional pausing and alternative splicing of pro-angiogenic genes orchestrate vessel growth [06ATAC_siRNF20_HUVEC]
Relations
BioProject
PRJNA875892
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File type/resource
GSE212524_RAW.tar
2.4 Gb
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