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Series GSE211403 Query DataSets for GSE211403
Status Public on May 01, 2023
Title Nono deficiency impedes the proliferation and adhesion of H9c2 cardiomyocytes through Pi3k/Akt signaling pathway [ATAC-seq]
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Purpose: Congenital heart disease (CHD) is the most common type of birth defect and the main noninfectious cause of death during the neonatal stage. Currently, hemizygous loss-of-function variants in NONO(The non-POU domain containing, octamer-binding) gene have been described as the cause of congenital heart defects in males. However, the effects of NONO on cardiac development have not been fully elucidated.
 
Overall design Rat cardiomyocytes H9c2 mRNA profiles and chromatin accessibility across the genome in wild type group and Nono gene knockout group
 
Contributor(s) Lei Y, Cao H, Wang X
Citation(s) 37130848
Submission date Aug 16, 2022
Last update date Jul 31, 2023
Contact name Xinrui Wang
E-mail(s) wanxiru@sjtu.edu.cn
Organization name Rui-Jin Hospital affiliated to Shanghai Jiao Tong University School of Medicine
Street address 197 Ruijin Rd II
City Shanghai
ZIP/Postal code 200025
Country China
 
Platforms (1)
GPL24688 HiSeq X Ten (Rattus norvegicus)
Samples (4)
GSM6469542 ATAC-WT1
GSM6469543 ATAC-WT2
GSM6469544 ATAC-Nono_KO1
This SubSeries is part of SuperSeries:
GSE211404 Nono deficiency impedes the proliferation and adhesion of H9c2 cardiomyocytes through Pi3k/Akt signaling pathway
Relations
BioProject PRJNA870109

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211403_RAW.tar 383.0 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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