|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Aug 18, 2022 |
Title |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors |
Organisms |
Homo sapiens; Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
This SuperSeries is composed of the SubSeries listed below.
|
|
|
Overall design |
Refer to individual Series
|
|
|
Citation(s) |
36206353 |
|
Submission date |
Aug 12, 2022 |
Last update date |
Nov 14, 2022 |
Contact name |
Hiroyoshi Nishikawa |
E-mail(s) |
hnishika@ncc.go.jp
|
Phone |
+81-4-7133-1111
|
Organization name |
National Cancer Center
|
Department |
Exploratory Oncology Research & Clinical Trial Center
|
Lab |
Division of Cancer Immunology
|
Street address |
Kahiwanoha 6-5-1
|
City |
Kashiwa |
State/province |
Chiba |
ZIP/Postal code |
277-8577 |
Country |
Japan |
|
|
Platforms (3) |
GPL21290 |
Illumina HiSeq 3000 (Homo sapiens) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
Samples (122)
|
GSM6448312 |
NSCLC 2, TIL, eTreg, bulk RNA-seq |
GSM6448313 |
NSCLC 2, TIL, eTconv, bulk RNA-seq |
GSM6448314 |
NSCLC 2, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448315 |
NSCLC 3 , TIL, eTreg, bulk RNA-seq |
GSM6448316 |
NSCLC 3, TIL, eTconv, bulk RNA-seq |
GSM6448317 |
NSCLC 3, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448318 |
NSCLC 4, TIL, eTreg, bulk RNA-seq |
GSM6448319 |
NSCLC 4, TIL, eTconv, bulk RNA-seq |
GSM6448320 |
NSCLC 4, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448321 |
NSCLC 5, TIL, eTreg, bulk RNA-seq |
GSM6448322 |
NSCLC 5, TIL, eTconv, bulk RNA-seq |
GSM6448323 |
NSCLC 5, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448324 |
NSCLC 6, TIL, eTreg, bulk RNA-seq |
GSM6448325 |
NSCLC 6, TIL, eTconv, bulk RNA-seq |
GSM6448326 |
NSCLC 6, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448327 |
NSCLC 7, TIL, eTreg, bulk RNA-seq |
GSM6448328 |
NSCLC 7, TIL, eTconv, bulk RNA-seq |
GSM6448329 |
NSCLC 7, TIL, effector CD8+ T, bulk RNA-seq |
GSM6448330 |
NSCLC 1, PBMC, eTreg, bulk RNA-seq |
GSM6448331 |
NSCLC 1, PBMC, eTconv, bulk RNA-seq |
GSM6448332 |
NSCLC 1, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448333 |
NSCLC 2, PBMC, eTreg, bulk RNA-seq |
GSM6448334 |
NSCLC 2, PBMC, eTconv, bulk RNA-seq |
GSM6448335 |
NSCLC 2, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448336 |
NSCLC 3, PBMC, eTreg, bulk RNA-seq |
GSM6448337 |
NSCLC 3, PBMC, eTconv, bulk RNA-seq |
GSM6448338 |
NSCLC 3, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448339 |
NSCLC 4, PBMC, eTreg, bulk RNA-seq |
GSM6448340 |
NSCLC 4, PBMC, eTconv, bulk RNA-seq |
GSM6448341 |
NSCLC 4, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448342 |
HD 1, PBMC, eTreg, bulk RNA-seq |
GSM6448343 |
HD 1, PBMC, eTconv, bulk RNA-seq |
GSM6448344 |
HD 1, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448345 |
HD 1, PBMC, nTreg, bulk RNA-seq |
GSM6448346 |
HD 1, PBMC, nTconv, bulk RNA-seq |
GSM6448347 |
HD 1, PBMC, naive CD8+ T, bulk RNA-seq |
GSM6448348 |
HD 2, PBMC, eTreg, bulk RNA-seq |
GSM6448349 |
HD 2, PBMC, eTconv, bulk RNA-seq |
GSM6448350 |
HD 2, PBMC,effector CD8+ T, bulk RNA-seq |
GSM6448351 |
HD 2, PBMC, nTreg, bulk RNA-seq |
GSM6448352 |
HD 2, PBMC, nTconv, bulk RNA-seq |
GSM6448353 |
HD 2, PBMC, naive CD8+ T, bulk RNA-seq |
GSM6448354 |
HD 3, PBMC, eTreg, bulk RNA-seq |
GSM6448355 |
HD 3, PBMC, eTconv, bulk RNA-seq |
GSM6448356 |
HD 3, PBMC, effector CD8+ T, bulk RNA-seq |
GSM6448357 |
HD 3, PBMC, nTreg, bulk RNA-seq |
GSM6448358 |
HD 3,PBMC, nTconv, bulk RNA-seq |
GSM6448359 |
HD 3, PBMC, naive CD8+ T, bulk RNA-seq |
GSM6448616 |
mouse, Batf ko Treg cells, rep1 |
GSM6448617 |
mouse, Batf ko Treg cells, rep2 |
GSM6448618 |
mouse, WT Treg cells, rep1 |
GSM6448619 |
mouse, WT Treg cells, rep2 |
GSM6448620 |
mouse, WT Treg cells, rep3 |
GSM6448621 |
mouse, TIL, Treg cells |
GSM6448622 |
mouse, TIL, Tconv cells |
GSM6448623 |
mouse, TIL, CD8+ T cells |
GSM6448794 |
NSCLC 8, TIL, eTreg, scRNA-seq |
GSM6448795 |
NSCLC 9, TIL, eTreg, scRNA-seq |
GSM6448796 |
NSCLC 10, TIL, eTreg, scRNA-seq |
GSM6448797 |
NSCLC 11, normal lung, Treg and CD8+ T, scRNA-seq |
GSM6448798 |
NSCLC 12, normal lung, Treg and CD8+ T, scRNA-seq |
GSM6448799 |
NSCLC 13, normal lung, Treg and CD8+ T, scRNA-seq |
GSM6448800 |
HD 4, PBMC, eTreg, scRNA-seq |
GSM6448801 |
HD 5, PBMC, eTreg, scRNA-seq |
GSM6448802 |
HD 5, PBMC, nTreg, scRNA-seq |
GSM6449878 |
NSCLC 8, TIL, eTreg, scATAC-seq |
GSM6449879 |
NSCLC 14, normal lung, Treg and CD8+ T, scATAC-seq |
GSM6449880 |
HD 4, PBMC, eTreg, scATAC-seq |
GSM6449881 |
HD 4, PBMC, CD4+ CD25+ T, scATAC-seq |
GSM6449882 |
HD 4, PBMC, nTreg, scATAC-seq |
GSM6449883 |
HD 5, PBMC, nTreg, scATAC-seq |
GSM6449884 |
HD 6, PBMC, eTreg, scATAC-seq |
GSM6449885 |
HD 6, PBMC, CD4+ CD25+ T, scATAC-seq |
GSM6454246 |
NSCLC 1, TIL, eTreg, bulk ATAC-seq |
GSM6454247 |
NSCLC 1, TIL, eTconv, bulk ATAC-seq |
GSM6454248 |
NSCLC 1, TIL, effector CD8+ T, bulk ATAC-seq |
GSM6454249 |
NSCLC 2, TIL, eTreg, bulk ATAC-seq |
GSM6454250 |
NSCLC 2, TIL, eTconv, bulk ATAC-seq |
GSM6454251 |
NSCLC 2, TIL, effector CD8+ T, bulk ATAC-seq |
GSM6454252 |
NSCLC 3, TIL, eTreg, bulk ATAC-seq |
GSM6454253 |
NSCLC 3, TIL, eTconv, bulk ATAC-seq |
GSM6454254 |
NSCLC 3, TIL, effector CD8+ T, bulk ATAC-seq |
GSM6454255 |
NSCLC 4, TIL, eTreg, bulk ATAC-seq |
GSM6454256 |
NSCLC 4, TIL, eTconv, bulk ATAC-seq |
GSM6454257 |
NSCLC 4, TIL, effector CD8+ T, bulk ATAC-seq |
GSM6454258 |
NSCLC 1, PBMC, eTreg, bulk ATAC-seq |
GSM6454259 |
NSCLC 1, PBMC, eTconv, bulk ATAC-seq |
GSM6454260 |
NSCLC 1, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454261 |
NSCLC 2, PBMC, eTreg, bulk ATAC-seq |
GSM6454262 |
NSCLC 2, PBMC, eTconv, bulk ATAC-seq |
GSM6454263 |
NSCLC 2, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454264 |
NSCLC 3, PBMC, eTreg, bulk ATAC-seq |
GSM6454265 |
NSCLC 3, PBMC, eTconv, bulk ATAC-seq |
GSM6454266 |
NSCLC 3, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454267 |
NSCLC 4, PBMC, eTreg, bulk ATAC-seq |
GSM6454268 |
NSCLC 4, PBMC, eTconv, bulk ATAC-seq |
GSM6454269 |
NSCLC 4, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454270 |
HD 1, PBMC, eTreg, bulk ATAC-seq |
GSM6454271 |
HD 1, PBMC, eTconv, bulk ATAC-seq |
GSM6454272 |
HD 1, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454273 |
HD 1, PBMC, nTreg, bulk ATAC-seq |
GSM6454274 |
HD 1, PBMC, nTconv, bulk ATAC-seq |
GSM6454275 |
HD 1, PBMC, naive CD8+ T, bulk ATAC-seq |
GSM6454276 |
HD 2, PBMC, eTreg, bulk ATAC-seq |
GSM6454277 |
HD 2, PBMC, eTconv, bulk ATAC-seq |
GSM6454278 |
HD 2, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454279 |
HD 2, PBMC, nTreg, bulk ATAC-seq |
GSM6454280 |
HD 2, PBMC, nTconv, bulk ATAC-seq |
GSM6454281 |
HD 2, PBMC, naive CD8+ T, bulk ATAC-seq |
GSM6454282 |
HD 3, PBMC, eTreg, bulk ATAC-seq |
GSM6454283 |
HD 3, PBMC, eTconv, bulk ATAC-seq |
GSM6454284 |
HD 3, PBMC, effector CD8+ T, bulk ATAC-seq |
GSM6454285 |
HD 3, PBMC, nTreg, bulk ATAC-seq |
GSM6454286 |
HD 3, PBMC, nTconv, bulk ATAC-seq |
GSM6454287 |
HD 3, PBMC, naive CD8+ T, bulk ATAC-seq |
GSM6454288 |
ATL-43T, bulk ATAC-seq |
GSM6454289 |
HuT102, bulk ATAC-seq |
GSM6454290 |
MJ, bulk ATAC-seq |
GSM6454291 |
MT-4, bulk ATAC-seq |
|
This SuperSeries is composed of the following SubSeries:
|
GSE211044 |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [bulk RNA-seq] |
GSE211062 |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [mouse bulk ATAC-seq] |
GSE211068 |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [scRNA-seq] |
GSE211087 |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [scATAC-seq] |
GSE211153 |
Integrated multiomics profiling identifies the differentiation program of regulatory T cells in human tumors [bulk ATAC-seq] |
|
Relations |
BioProject |
PRJNA869105 |
|
|
|
|
|