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| Status |
Public on Feb 03, 2023 |
| Title |
Comparative analysis of transcriptome profiles reveals organ-dependent (Intestine and Tail) genomic and nongenomic actions of thyroid hormone in Xenopus tropicalis tadpoles |
| Organism |
Xenopus tropicalis |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate which genes expression are inhibited in TR double knockout tadpoles under over thyroid hormone condition in each tissue.
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| Overall design |
Compare the thyroid hormone target gene expression with or without thyroid hormone receptor in the intestine and tail at stage 54 in anuran amphibian, Xenopus tropicalis.
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| Contributor(s) |
Wang S, Shibata Y, Tanizaki Y, Zhang H, Shi YB |
| Citation(s) |
36503276 |
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| Submission date |
Aug 03, 2022 |
| Last update date |
Mar 16, 2023 |
| Contact name |
Ryan Dale |
| E-mail(s) |
dalerr@nih.gov
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| Organization name |
National Institutes of Health
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| Department |
National Institute of Child Health and Human Development
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| Lab |
Bioinformatics and Scientific Programming Core
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| Street address |
Rm 10D39, 10 Center Drive
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| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
| GPL30018 |
Illumina NovaSeq 6000 (Xenopus tropicalis) |
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| Samples (24)
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| GSM6430607 |
T3, Intestine, TRDKO; rep1 |
| GSM6430608 |
T3, Intestine, TRDKO; rep2 |
| GSM6430609 |
T3, Intestine, TRDKO; rep3 |
| GSM6430610 |
Control, Intestine, WT; rep1 |
| GSM6430611 |
Control, Intestine, WT; rep2 |
| GSM6430612 |
Control, Intestine, WT; rep3 |
| GSM6430613 |
T3, Intestine, WT; rep1 |
| GSM6430614 |
T3, Intestine, WT; rep2 |
| GSM6430615 |
T3, Intestine, WT; rep3 |
| GSM6430616 |
Control, Tail, TRDKO; rep1 |
| GSM6430617 |
Control, Tail, TRDKO; rep2 |
| GSM6430618 |
Control, Tail, TRDKO; rep3 |
| GSM6430619 |
T3, Tail, TRDKO; rep1 |
| GSM6430620 |
T3, Tail, TRDKO; rep2 |
| GSM6430621 |
T3, Tail, TRDKO; rep3 |
| GSM6430622 |
Control, Tail, WT; rep1 |
| GSM6430623 |
Control, Tail, WT; rep2 |
| GSM6430624 |
Control, Tail, WT; rep3 |
| GSM6430625 |
T3, Tail, WT; rep1 |
| GSM6430626 |
T3, Tail, WT; rep2 |
| GSM6430627 |
T3, Tail, WT; rep3 |
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| Relations |
| BioProject |
PRJNA865748 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE210456_featurecounts_by_gene_name.txt.gz |
3.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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