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Series GSE210207 Query DataSets for GSE210207
Status Public on Aug 04, 2022
Title A neutrophil - B-cell axis impacts tissue damage control during sepsis via Cxcr4
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Sepsis is a life-threatening condition characterized by uncontrolled systemic inflammation and coagulation, leading to multi-organ failure. Therapeutic options to prevent sepsis-associated immunopathology remain scarce. Here, we established a mouse model of long-lasting disease tolerance during severe sepsis, manifested by diminished immunothrombosis and organ damage in spite of a high pathogen burden. We found that, both neutrophils and B cells emerged as key regulators of tissue integrity. Enduring changes in the transcriptional profile of neutrophils, included upregulated Cxcr4 expression in protected, tolerant hosts. Neutrophil Cxcr4 upregulation required the presence of B cells, suggesting that B cells promoted disease tolerance by improving tissue damage control via the suppression of neutrophils’ tissue damaging properties. Finally, therapeutic administration of a Cxcr4 agonist successfully promoted tissue damage control and prevented liver damage during sepsis. Our findings highlight the importance of a critical B-cell/neutrophil interaction during sepsis and establish neutrophil Cxcr4 activation as a potential means to promote disease tolerance during sepsis.
 
Overall design 200 neutrophils (single/live/CD45+/CD3-/CD19-/Ly6G+/Ly-6Cint+) were sorted from mouse bone marrow or blood single cell suspensions into cell lysis buffer (0.2% Triton X-100 and 2 U/µl RNase Inhibitor) using a FACSAria Fusion cytometer. Cell lysates were stored at -80°C. Library preparation was performed according to Smart-Seq2, followed by sequencing of pooled libraries on the Illumina HiSeq 2000/2500 (50 bp single‐read setup) at the Biomedical Sequencing Facility of the Medical University of Vienna and CeMM. For analysis, reads were adapter-trimmed (Trimmomatic) and aligned to the mm10 reference genome (STAR aligner). Counting of reads mapping to genes was performed using the summarizeOverlaps function (Bioconductor R package GenomicAlignments). Differentially expressed genes were identified using DESeq2, whereby separate models per organ and condition and formulated for all pairwise comparisons. Filtering was performed by independent hypothesis weighting (ihw R package).
 
Contributor(s) Gawish R, Gorki A, Watzenboeck M, Farhat A
Citation(s) 36178806
Submission date Aug 01, 2022
Last update date Nov 03, 2022
Contact name Sylvia Knapp
E-mail(s) theknapplab@gmail.com, sylvia.knapp@meduniwien.ac.at
Organization name Medical University of Vienna
Street address Währinger Gürtel 18-20
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (49)
GSM6423519 Bm10_a10
GSM6423520 Bm11_b1
GSM6423521 Bm12_b2
Relations
BioProject PRJNA864776

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE210207_rnaseq_deseq_global_counts_raw.tsv.gz 2.2 Mb (ftp)(http) TSV
GSE210207_rnaseq_deseq_global_fpkms.tsv.gz 7.7 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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