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| Status |
Public on Aug 25, 2022 |
| Title |
The regulators of peroxisomal acyl-carnitine shuttle CROT and CRAT promote metastasis in melanoma |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
For cancer cells to use the haematogenous route of metastasis overcoming anoikis is a prerequisite. By performing RNAseq in melanoma cells, we discovered that after detachment melanoma cells display increased expression of regulators of fatty acid transport and fatty acid beta-oxidation
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for adherent and in supension, 501mel and WM266-4 melanoma cell lines, grown with different glucose concentrations.
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| Contributor(s) |
Larrayoz IM, Arozarena I, Lasheras-Otero I |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jul 19, 2022 |
| Last update date |
Aug 26, 2022 |
| Contact name |
Ignacio M Larrayoz |
| E-mail(s) |
ilarrol@hotmail.com
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| Organization name |
CIBIR
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| Department |
Oncology Area
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| Lab |
Angiogenesis
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| Street address |
C\ Piqueras 98, Ed CIBIR
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| City |
Logroño |
| State/province |
Please Select |
| ZIP/Postal code |
26006 |
| Country |
Spain |
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| Platforms (1) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
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| Samples (24)
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| GSM6348255 |
501mel cells, Adherent, 25mM Glucose, replicate #1 |
| GSM6348256 |
501mel cells, Adherent, 25mM Glucose, replicate #2 |
| GSM6348257 |
501mel cells, Adherent, 25mM Glucose, replicate #3 |
| GSM6348258 |
501mel cells, Adherent, 5mM Glucose, replicate #1 |
| GSM6348259 |
501mel cells, Adherent, 5mM Glucose, replicate #2 |
| GSM6348260 |
501mel cells, Adherent, 5mM Glucose, replicate #3 |
| GSM6348261 |
501mel cells, Suspension, 25mM Glucose, replicate #1 |
| GSM6348262 |
501mel cells, Suspension, 25mM Glucose, replicate #2 |
| GSM6348263 |
501mel cells, Suspension, 25mM Glucose, replicate #3 |
| GSM6348264 |
501mel cells, Suspension, 5mM Glucose, replicate #1 |
| GSM6348265 |
501mel cells, Suspension, 5mM Glucose, replicate #2 |
| GSM6348266 |
501mel cells, Suspension, 5mM Glucose, replicate #3 |
| GSM6348267 |
WM266-4 cells, Adherent, 25mM Glucose, replicate #1 |
| GSM6348268 |
WM266-4 cells, Adherent, 25mM Glucose, replicate #2 |
| GSM6348269 |
WM266-4 cells, Adherent, 25mM Glucose, replicate #3 |
| GSM6348270 |
WM266-4 cells, Adherent, 5mM Glucose, replicate #1 |
| GSM6348271 |
WM266-4 cells, Adherent, 5mM Glucose, replicate #2 |
| GSM6348272 |
WM266-4 cells, Adherent, 5mM Glucose, replicate #3 |
| GSM6348273 |
WM266-4 cells, Suspension, 25mM Glucose, replicate #1 |
| GSM6348274 |
WM266-4 cells, Suspension, 25mM Glucose, replicate #2 |
| GSM6348275 |
WM266-4 cells, Suspension, 25mM Glucose, replicate #3 |
| GSM6348276 |
WM266-4 cells, Suspension, 5mM Glucose, replicate #1 |
| GSM6348277 |
WM266-4 cells, Suspension, 5mM Glucose, replicate #2 |
| GSM6348278 |
WM266-4 cells, Suspension, 5mM Glucose, replicate #3 |
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| Relations |
| BioProject |
PRJNA860090 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE208547_Normalized_Counts.csv.gz |
1.6 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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