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Series GSE207654 Query DataSets for GSE207654
Status Public on Aug 28, 2022
Title Direct chemical reprogramming of human cord blood erythroblasts to induced megakaryocytes that produce platelets
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary The shortage of platelets is becoming increasingly prominent owing to their short shelf life, limited supply, and increasing demand in response to public health incidents. It is an attractive idea to obtain large numbers of transfusible megakaryocytes (MKs) and platelets from somatic cells via cell lineage reprogramming. However, generating human MKs from somatic cells using a pharmacological reprogramming approach has not been widely explored. Here, we report the successful generation of human induced MKs (iMKs) from cord blood erythroblasts (EBs) using a chemical reprogramming strategy with a combination of four small molecules (4M): Bix01294, RG108, VPA, and PD0325901. The iMKs exhibited the ability to produce proplatelets and release vital functional platelets in vitro, demonstrating their similarity to natural MKs. Importantly, after injection into mice, iMKs were able to mature and give rise to functional platelets that were incorporated into newly formed thrombi. The reprogramming process was carefully examined using single-cell RNA sequencing, which revealed an efficient, rapid, and successful cell fate conversion of EBs to iMKs by 4M via the intermediate state of bipotent precursors. Assay for transposase-accessible chromatin sequencing results indicated that 4M induced genome-wide chromatin remodeling during MK reprogramming from EBs. 4M drove the transition of the transcription factor gene network by downregulating the key erythroid transcription factor genes KLF1 and MYB and subsequently upregulating MK development-associated transcription factor genes, including FLI1 and MEIS1. This process eventually led human cord blood EBs to acquire the MK fate. Thus, our chemical reprogramming of cord blood EBs to iMKs provides a simple and efficient approach to generating clinically transfusible MKs and platelets.
 
Overall design We performed single cell RNA-Seq and assay for transposase-accessible chromatin sequencing to analyse the molecular mechanism of chemical reprogramming system.
Web link https://doi.org/10.1016/j.stem.2022.07.004
 
Contributor(s) Qin J, Zhang J, Jiang J, Li Y, Pei X
Citation(s) 35931032
Submission date Jul 07, 2022
Last update date Aug 30, 2022
Contact name Jinhua Qin
E-mail(s) qinjinhuarhea@126.com
Organization name Beijing Institute of Transfusion
Street address Taiping Road
City Beijing
ZIP/Postal code 100850
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM6304413 scRNA-seq_EB
GSM6304414 scRNA-seq_iMK-D3
GSM6304415 scRNA-seq_iMK-D5
Relations
BioProject PRJNA856626

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207654_RAW.tar 2.4 Gb (http)(custom) TAR (of BW, MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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