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Series GSE207539 Query DataSets for GSE207539
Status Public on Jul 01, 2024
Title The immune landscape and mechanism of hepatitis B virus surface antigen clearance [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hepatitis B virus (HBV) surface antigen (HBsAg) clearance constitutes the hallmark of resolution of acute infection and is a therapeutic goal for functional cure of chronic hepatitis B. Here, we reveal the immunological landscape and mechanism of HBsAg clearance in mice. After acquiring nonopsonized HBsAg, B cells prime CD4+ T cell responses by CCR5- and EBI2-guided interaction with CD4+ T cells at follicular and interfollicular regions, respectively. Monocyte-derived macrophages transport complement-opsonized HBsAg to follicular dendritic cells (FDCs) to maintain germinal center reaction. Batf3+ XCR1+ conventional type 1 DCs (cDC1s) acquire and present HBsAg by MHC-I cross-dressing to drive CD8+ T cell responses in liver. We map the antigen-presenting cell (APC)-T cell crosstalk landscape and identify key costimulatory signals. The immune responses in patients with acute HBV infection are revealed by a single-cell transcriptome atlas. These findings revolutionize our understanding of anti-HBV immune responses and would lead to immunotherapeutic strategies for HBsAg clearance.
 
Overall design HBsAg-specific S129G1HL B cells with/without co-transferred OT-II T cells in the spleens were FACS-sorted from mice at 0 h, 18 h, day 1 and day 2.5 after pHBV1.3/OVA323-339 hydrodynamically injection, and used for RNAseq.
 
Contributor(s) Li X, Sun W, Xu X, Bai L, Jiang Q, Jin C, Liu J, Shi B, Zhang J, Yuan Z, Li J
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Submission date Jul 06, 2022
Last update date Jul 01, 2024
Contact name Jianhua Li
E-mail(s) jianhuali@fudan.edu.cn
Organization name Fudan University
Street address NO.131 DONGAN RD., FUXING BUILDING 306
City Shanghai
ZIP/Postal code 200032
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (18)
GSM6294300 S129G1_0h_biol_rep_1
GSM6294301 S129G1_0h_biol_rep_2
GSM6294302 S129G1_0h_biol_rep_3
This SubSeries is part of SuperSeries:
GSE207543 The immune landscape and mechanism of hepatitis B virus surface antigen clearance
Relations
BioProject PRJNA856138

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207539_RAW.tar 4.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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