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Series GSE207460 Query DataSets for GSE207460
Status Public on Jul 01, 2024
Title An integrated ’omics approach highlights the role of epigenetic events to explain and predict response to neoadjuvant chemotherapy and bevacizumab in breast cancer
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary DNA methylation profiling (Illumina Infinium 450K) was performed on fresh frozen tumor biopsies taken before, during and after treatment from patients receiving neoadjuvant chemotherapy with or without the anti-angiogenic drug bevacizumab
 
Overall design Bisulphite converted DNA from 290 samples from 132 patients were hybridised to the Illumina Infinium 150k Human Methylation Beadchip
 
Contributor(s) Fleischer T, Haugen MH, Ankill J, Silwal-Pandit L, Børresen-Dale A, Hedenfalk I, Hatschek T, Tost J, Engebraaten O, Kristensen VN
Citation(s) 38671580
Submission date Jul 05, 2022
Last update date Aug 27, 2024
Contact name Thomas Fleischer
E-mail(s) thomas.fleischer@rr-research.no
Organization name Oslo University Hospital
Department Department of Cancer Genetics, Institute for Cancer Research
Street address Ullernchausséen 70
City Oslo
ZIP/Postal code 0310
Country Norway
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (290)
GSM6287892 genomic DNA from Patient89_week25
GSM6287893 genomic DNA from Patient52_week25
GSM6287894 genomic DNA from Patient18_week12
Relations
BioProject PRJNA856150

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207460_Fleischer_GEO_NeoAva_methylation_Matrix_processed.txt.gz 984.1 Mb (ftp)(http) TXT
GSE207460_RAW.tar 2.5 Gb (http)(custom) TAR (of IDAT)
Processed data are available on Series record
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