|
| Status |
Public on Jun 14, 2023 |
| Title |
Insplico: Effective computational tool for studying intron splicing order genome-wide with short and long RNA-seq reads |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Investigation of the intron splicing order in different tissues , cell lines and conditions
|
| |
|
| Overall design |
RNA seq from mouse tissues (Cerebellum, Cortex and Liver, Chromatin total RNA, Cytoplasmic polyA RNA) and human cell lines expressing GFP or SRRM4 (total RNA)
|
| |
|
| Contributor(s) |
Gohr A, Torres-Mendez A, Valcarcel J, Bonnal S, Irimia M |
| Citation(s) |
37026474 |
| |
| Submission date |
Jul 05, 2022 |
| Last update date |
Jun 15, 2023 |
| Contact name |
Manuel Irimia |
| E-mail(s) |
mirimia@gmail.com
|
| Phone |
+34933160212
|
| Organization name |
Centre for Genomic Regulation (CRG)
|
| Street address |
Dr. Aiguader, 88
|
| City |
Barcelona |
| State/province |
Barcelona |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (10)
|
|
| Relations |
| BioProject |
PRJNA855685 |
Less...
More...