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Series GSE206114 Query DataSets for GSE206114
Status Public on Aug 31, 2022
Title Parenchymal border macrophages regulate CSF flow dynamics [5xFAD]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Microglial cells are the resident macrophages of the brain. Perivascular macrophages (PVM) are also myeloid resident cells that are located at the interface between blood, CSF and brain in the perivascular space. Due to their strategic location and their ability to sample CSF content, we hypothesized that PVM might play a role in CSF flow. Using different fluorescent tracers injected either into the CSF (influx) or the brain parenchyma (efflux) we assessed their spatio-temporal distribution and found that ablation (using clodronate liposomes) or dysfunction (using genetic tools) of PVM alters CSF dynamics and patterns. Using single cell RNA sequencing, we found that PBMs can be divided in two sub-populations, and that one population of PBMs could interact with vascular smooth muscle cells, which allow arterial pulsations and subsequently CSF flow. Interestingly, aging results in altered PVM phenotype, and reversing this phenotype using macrophage specific grown factors reversed some of aging-associated dysfunctions of CSF flow. In summary, our results identify a new role of PVM in CSF flow and open new avenues for therapeutical applications targeting PVM in neurodegenerative diseases such as Alzheimer’s disease.
 
Overall design Mice received a lethal intraperitoneal injection of euthasol (10% v/v in saline, 250ml), and transcardially perfused with PBS containing 10U/ml heparin. Cortex were gently dissected in PBS, digested and stained after myelin removal with CD13 (to stain for mural cells), CD31 (endothelial cells), and CD45 (immune cells). Stromal cells (i.e., endothelial+mural) and immune cells were then sorted and prepared for single cell sequencing.
 
Contributor(s) Drieu A, Dykstra T, Kipnis J
Citation(s) 36352225
Submission date Jun 14, 2022
Last update date Nov 18, 2022
Contact name Jonathan Kipnis
Organization name Washington University in Saint Louis
Department Pathology and Immunology
Lab Kipnis Lab
Street address 4515 McKinley Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM6243490 5xFAD.CD13
GSM6243491 5xFAD.CD45
GSM6243492 WT.CD13
This SubSeries is part of SuperSeries:
GSE188285 Parenchymal border macrophages regulate CSF flow dynamics
Relations
BioProject PRJNA849229

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Supplementary file Size Download File type/resource
GSE206114_RAW.tar 155.8 Mb (http)(custom) TAR (of TAR)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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