|
| Status |
Public on Jun 19, 2022 |
| Title |
A Physcomitrella protein acts in spermatogenesis and sporophyte abortion |
| Organism |
Physcomitrium patens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Functional targeting of PpPINC gene in Physcomitrella, researching it's role during gametangia and sporophyte development.
|
| |
|
| Overall design |
Collection of mature gametangia, day 18 of sporophyte induction, per sample 8 antheridia (male) or 8 archegonia (female) were collected from wild type and PpPINC mutant plant (pinC#29) on three different occasions.
|
| |
|
| Contributor(s) |
Lueth VM, Rempfer C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 01, 2022 |
| Last update date |
Jun 19, 2022 |
| Contact name |
Volker Michael Lüth |
| Organization name |
University of Freiburg
|
| Street address |
Schänzlestr. 1
|
| City |
Freiburg |
| ZIP/Postal code |
D-79104 Freiburg |
| Country |
Germany |
| |
|
| Platforms (1) |
| GPL32248 |
Illumina NovaSeq 6000 (Physcomitrium patens) |
|
| Samples (12)
|
| GSM6209239 |
Mature archegonia pinC#29 (biol rep 1) |
| GSM6209240 |
Mature archegonia pinC#29 (biol rep 2) |
| GSM6209241 |
Mature archegonia pinC#29 (biol rep 3) |
| GSM6209242 |
Mature antheridia wild type (biol rep 1) |
| GSM6209243 |
Mature antheridia wild type (biol rep 2) |
| GSM6209244 |
Mature antheridia wild type (biol rep 3) |
| GSM6209245 |
Mature archegonia wild type (biol rep 1) |
| GSM6209246 |
Mature archegonia wild type (biol rep 2) |
| GSM6209247 |
Mature archegonia wild type (biol rep 3) |
|
| Relations |
| BioProject |
PRJNA844298 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE205257_Gametangia_RNA_Count_Matrix_feature_counts_FilteredafterCDScountfeature.txt.gz |
605.5 Kb |
(ftp)(http) |
TXT |
| GSE205257_Male_Female_Galaxy967_DESeq2_result_file.tabular.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
| GSE205257_PF_WF_Galaxy963_DESeq2_result_file.tabular.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE205257_PM_PF_Galaxy969_DESeq2_result_file.tabular.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE205257_PM_WM_Galaxy961_DESeq2_result_file.tabular.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE205257_Pko_WT_Galaxy965_DESeq2_result_file.tabular.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSE205257_WM_WF_Galaxy971_DESeq2_result_file.tabular.txt.gz |
1.3 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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