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Series GSE204910 Query DataSets for GSE204910
Status Public on May 07, 2024
Title FLT4 causes developmental disorders of the cardiovascular and lymphovascular systems via pleiotropic molecular mechanisms
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Genetic variation in FLT4 is associated with the most prevalent cyanotic congenital heart disease,Tetralogy of Fallot (TOF). Distinct genetic variation in FLT4 is an established cause of Milroy disease, the prevailing form of primary hereditary lymphoedema. Phenotypic features of the conditions are non-overlapping, implying pleiotropic mechanisms. Here, TOF-associated FLT4 variants identified in patients,aggregate in the perinuclear/secretory pathway, activating proteostatic/metabolic signalling that lymphoedema-associated FLT4 variants do not. FLT4 TOF variants display characteristic gene expression changes in developmental signalling pathways, when expressed in undifferentiated human endothelial cells, revealing a role for FLT4 in cardiogenesis distinct from its role in lymphatic development. Inhibition of the main pathways of proteostasis abrogates these effects, identifying potential avenues for therapeutic intervention. We show that a gain-of-pathogenic-function mechanism causes TOF, contrasting with the dominant negative mechanism identified for Milroy-causative variants.This is among the first demonstrations that mechanistically elucidates developmental pleiotropy of thevascular system.
 
Overall design We performed gene expression analysis using data obtained from RNA-seq of FLT4 WT and FLT4 genes containing variants associated with both TOF and Milroy disease (MD).
Web link https://academic.oup.com/cardiovascres/advance-article/doi/10.1093/cvr/cvae104/7666260?utm_source=advanceaccess&utm_campaign=cardiovascres&utm_medium=email
 
Contributor(s) Monaghan RM, Naylor RW, Flatman D, Kasher PR, Williams SG, Keavney BD
Citation(s) 38713105
Submission date May 26, 2022
Last update date Aug 18, 2024
Contact name Simon Williams
E-mail(s) simon.williams2@manchester.ac.uk
Organization name The University of Manchester
Street address Oxford Road
City Manchester
ZIP/Postal code M13 9PT
Country United Kingdom
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (18)
GSM6202177 FLT4_WT_rep1
GSM6202178 FLT4_WT_rep2
GSM6202179 FLT4_WT_rep3
Relations
BioProject PRJNA842706

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE204910_RAW.tar 46.5 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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