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| Status |
Public on Jun 01, 2024 |
| Title |
Fat graft survival requires metabolic reprogramming towards glycolytic pathway |
| Organism |
Mus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Background: The mechanisms underlying fat graft survival are poorly understood. Here, we performed unbiased transcriptomics analysis of mouse fat graft model to find out the molecular mechanism of free fat graft survival.
Methods: We conducted RNA-sequencing (RNA-seq) analysis of mouse free subcutaneous fat graft model at day 3 and 7 following grafting (n=5). High-throughput sequencing was performed as paired-end using NovaSeq6000 (Illumina, CA, USA). The calculated transcripts per million (TPM) values were processed for principal component analysis (PCA), unsupervised hierarchically clustered heat map generation, and Gene set enrichment analysis.
Results: PCA and heat map data revealed global differences in the transcriptome of grafted fat when compared with non-graft control. The top meaningful up-regulated gene sets in the grafted fat were related to epithelial mesenchymal transition and hypoxia by day 3, and angiogenesis by day 7. Mechanistically, the glycolysis pathway was commonly upregulated in the grafted fat at day 3 (FDR q=0.012) and day 7 (FDR q=0.084). In subsequent experiments, pharmacological inhibition of glycolytic pathway in the grafted fat with 2-Deoxy-D-glucose (2-DG) significantly suppressed fat graft retention rates, both grossly and microscopically (n=5).
Conclusions: Global transcriptome analysis and pharmacologic inhibition study revealed that free adipose tissue grafts undergo metabolic reprogramming towards glycolytic pathway. Whether targeting the pathway wound enhance graft survival rate remains to be investigated.
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| Overall design |
Adipose mRNA profiles of fat grafts: 1) control, 2) 3 day graft, 3) 7 day graft
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| Contributor(s) |
Jo T |
| Citation(s) |
37140074 |
| |
| Submission date |
May 23, 2022 |
| Last update date |
Sep 04, 2024 |
| Contact name |
Taehee Jo |
| E-mail(s) |
taeheejo@dsmc.or.kr
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| Organization name |
Keimyung University Dongsan Hospital
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| Department |
Department of Plastic and Reconstructive Surgery
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| Street address |
1035 Dalgubeol daero
|
| City |
Daegu |
| ZIP/Postal code |
42601 |
| Country |
South Korea |
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| Platforms (1) |
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| Samples (15)
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| Relations |
| BioProject |
PRJNA841563 |
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