NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE202402 Query DataSets for GSE202402
Status Public on May 06, 2023
Title Xmal-RRBS on breast carcinoma samples taken before and after neoadjuvant chemotherapy
Organism Homo sapiens
Experiment type Methylation profiling by high throughput sequencing
Summary Determination of genes demonstrating differential methylation of CpG islands in tumor samples before and after treatment for revealing main metabolic, regulatory and biological processes
 
Overall design Reduced representation bisulfite sequencing by XmaI-RRBS (Tanas et al., 2017)
 
Contributor(s) Kalinkin AI, Tanas AS, Strelnikov VV
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 06, 2022
Last update date May 08, 2023
Contact name Alexey Igorevich Kalinkin
E-mail(s) alexeika2@yandex.ru
Organization name RCMG
Department Epigenetics
Street address Moskvorechie st., 1
City Moscow
State/province Russia
ZIP/Postal code 115478
Country Russia
 
Platforms (1)
GPL17301 Ion Torrent PGM (Homo sapiens)
Samples (40)
GSM6118781 RRBS: t021
GSM6118782 RRBS: t014
GSM6118783 RRBS: t089
Relations
BioProject PRJNA835856

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE202402_RAW.tar 109.2 Mb (http)(custom) TAR (of COV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap