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| Status |
Public on May 08, 2022 |
| Title |
Pooled single-cell RNA-seq data from T cells from human synovial tissue |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
T cells from several separate single-cell RNAseq datasets from human RA synovial tissue were combined into one dataset. The dataset includes both previously published and new data.
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| |
|
| Overall design |
Cryopreserved human synovial tissue samples from patients with rheumatoid arthritis or osteoarthritis were disaggregated and processed for single-cell RNAseq.
***Please note that FASTQ files (for the new RA samples) will be uploaded to dbGaP since these are human patient samples****
***Please note that raw data for the published synovial tissue samples from RA patients [amp] is available on dbGaP under accession number phs001457.v1.p1.
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| |
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| Contributor(s) |
Brenner MB, Jonsson AH, Wei K |
| Citation(s) |
35704599 |
| |
| Submission date |
May 06, 2022 |
| Last update date |
Aug 21, 2022 |
| Contact name |
Anna Helena Jonsson |
| E-mail(s) |
ajonsson@bwh.harvard.edu, annahelena.jonsson@cuanschutz.edu
|
| Organization name |
Brigham and Women's Hospital/Harvard Medical School
|
| Department |
Dept of Medicine/Division of Rheumatology, Inflammation, and Immunity
|
| Lab |
Michael B. Brenner
|
| Street address |
60 Fenwood Road
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02115 |
| Country |
USA |
| |
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| Platforms (2) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (5)
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| GSM6112175 |
Previously published AMP Rheumatoid Arthritis Phase 1 data from PMID: 31061532 [amp] |
| GSM6112176 |
New RA synovial tissue T cell data from sample bwh002, also known as BRI002 |
| GSM6112177 |
New RA synovial tissue T cell data from sample bwh064 |
| GSM6112178 |
New RA synovial tissue T cell data from sample bwh075 |
| GSM6112179 |
New RA synovial tissue T cell data from sample bwh076 |
|
| Relations |
| BioProject |
PRJNA835813 |
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