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| Status |
Public on Dec 19, 2022 |
| Title |
A manganese-independent aldolase enables Staphylococcus aureus to resist host-imposed metal starvation |
| Organism |
Staphylococcus aureus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goal of this study was to determine gene expression in WT and arlRS KO bacteria when grown in the presence and absence of glucose.
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| Overall design |
WT and arlRS KO S. aureus Newman were grown in TSB with and without glucose and gene expression was then determined by RNAseq.
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| Contributor(s) |
Kehl-Fie TE, Radlin JN, Clark LV, Fields CJ |
| Citation(s) |
36598285 |
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| Submission date |
May 05, 2022 |
| Last update date |
Jun 14, 2023 |
| Contact name |
Thomas E Kehl-Fie |
| Organization name |
University of Illinois at Urbana-Champaign
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| Department |
Microbiology
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| Street address |
601 South Goodwin Avenue, MC-110
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| City |
Urbana |
| State/province |
Il |
| ZIP/Postal code |
61801-3760 |
| Country |
USA |
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| Platforms (1) |
| GPL27158 |
Illumina NovaSeq 6000 (Staphylococcus aureus) |
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| Samples (12)
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| GSM6107515 |
Staphylococcus aureus, ArlRS+, glucose+, Replicate 1 |
| GSM6107516 |
Staphylococcus aureus, ArlRS+, glucose+, Replicate 2 |
| GSM6107517 |
Staphylococcus aureus, ArlRS+, glucose+, Replicate 3 |
| GSM6107518 |
Staphylococcus aureus, ArlRS+, glucose-, Replicate 1 |
| GSM6107519 |
Staphylococcus aureus, ArlRS+, glucose-, Replicate 2 |
| GSM6107520 |
Staphylococcus aureus, ArlRS+, glucose-, Replicate 3 |
| GSM6107521 |
Staphylococcus aureus, ArlRS-, glucose+, Replicate 1 |
| GSM6107522 |
Staphylococcus aureus, ArlRS-, glucose+, Replicate 2 |
| GSM6107523 |
Staphylococcus aureus, ArlRS-, glucose+, Replicate 3 |
| GSM6107524 |
Staphylococcus aureus, ArlRS-, glucose-, Replicate 1 |
| GSM6107525 |
Staphylococcus aureus, ArlRS-, glucose-, Replicate 2 |
| GSM6107526 |
Staphylococcus aureus, ArlRS-, glucose-, Replicate 3 |
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| Relations |
| BioProject |
PRJNA835310 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE202268_kehl-fie_logCPM_Glc_2021-07-02.txt.gz |
388.4 Kb |
(ftp)(http) |
TXT |
| GSE202268_kehl-fie_rawcounts_Glc_2022-04-14.txt.gz |
185.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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