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Series GSE201994 Query DataSets for GSE201994
Status Public on May 05, 2022
Title Phenotype screens of genetically engineered mouse models of pancreatic cancer identify a Tgfa-Ccl2-paxillin axis driving human-like perineural invasion
Organism Mus musculus
Experiment type Expression profiling by array
Summary Solid cancers such as pancreatic cancer (PDAC) often exploit nerves for rapid spread. This neural invasion (NI) is an independent prognostic factor in PDAC and the main trigger for local recurrence and severe pain. However, genetically engineered mouse models (GEMM) of PDAC do not adequately represent the morphology of human NI.
Therefore, we performed a systematic morphological screening of mutant mice with combinations of mutant alleles of oncogenes and tumour suppressors from our mouse repository.
In a newly generated TPAC and TPC mouse mutant with pancreas-specific overexpression of transforming growth factor alpha (TGFa) and conditional deletion of p53, we identified human-like NI. To dissect the molecular mechanisms behind, we compared the transcriptome of TPAC and TPC mouse mutants with known KPC and KC mice lacking NI pathology.
Our results revealed strong enrichment of genes encoding the extracellular matrix, including ECM glycoproteins, collagens and proteoglycans involved in biological oxidation, nuclear receptors, and proteins encoding drug metabolism via cytochrome P450 and retinoic acid signaling in TPAC cancer cells.

 
Overall design We analysed global RNA expression in pancreatic tumours from mouse PDAC cell lines with high neuroinvasive potential and compared them to non-invasive tumour cells.
 
Contributor(s) Demir EI, Istvanffy R
Citation(s) 37607005
Submission date May 02, 2022
Last update date Sep 18, 2023
Contact name Rouzanna Istvánffy
E-mail(s) rouzanna.istvanffy@tum.de
Organization name Klinikum rechts der Isar
Department Department of Surgery
Street address Ismaningerstr. 22
City Munich
ZIP/Postal code 81675
Country Germany
 
Platforms (1)
GPL6246 [MoGene-1_0-st] Affymetrix Mouse Gene 1.0 ST Array [transcript (gene) version]
Samples (16)
GSM6086427 KC 1_P009_05_K225_log2 Signal
GSM6086428 KC 2_P009_06_K223_log2 Signal
GSM6086429 KC 3_P009_07_20057_log2 Signal
Relations
BioProject PRJNA833954

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201994_RAW.tar 68.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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