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Series GSE201855 Query DataSets for GSE201855
Status Public on Nov 28, 2023
Title Epithelial zonation along the mammalian small intestine defines five discrete metabolic domains [Mouse_scRNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Longitudinal zonation of epithelial cells across the mammalian small intestine defines five domains of nutrient absorption. 
 
Overall design Sorted epithelial cells and intestinal progenitor cells (intestinal stem cells and transit amplifying cells) were collected from 30 equal segments across the full length of 2 murine small intestines, barcoded using MULTIseq technology, pooled, and sequenced.
 
Contributor(s) Zwick RK, Boffelli D, Klein OD
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BioProject PRJNA827827
Submission date Apr 29, 2022
Last update date Nov 29, 2023
Contact name Rachel Klapper Zwick
E-mail(s) Rachel.Zwick@ucsf.edu
Organization name University of California, San Francisco
Lab Ophir Klein Lab
Street address 513 Parnassus Ave.
City San Francisco
ZIP/Postal code 94143
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (2)
GSM6077219 Total intestinal epithelial cell sample (Mouse_scRNA-seq)
GSM6077220 Intestinal progenitor cell sample (Mouse_scRNA-seq)
This SubSeries is part of SuperSeries:
GSE201859 Epithelial zonation along the mammalian small intestine defines five discrete metabolic domains

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Supplementary file Size Download File type/resource
GSE201855_RAW.tar 202.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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