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Series GSE201791 Query DataSets for GSE201791
Status Public on May 01, 2022
Title A Yap-dependent transcriptional program directs cell migration for embryo axis assembly
Organism Oryzias latipes
Experiment type Expression profiling by high throughput sequencing
Summary The assembly of the embryo’s primary axis is a fundamental landmark to establish the vertebrate body plan. Although the morphogenetic movements directing cell convergence towards the midline have been described extensively, little is known on how gastrulating cells interpret mechanical cues. Yap proteins are well-known transcriptional mechanotransducers, yet their role in gastrulation remains elusive. Here we show that the double knockout of yap and its paralog yap1b in medaka results in an axis assembly failure, due to reduced displacement and migratory persistence in mutant cells. We identified genes involved in cytoskeletal organization and cell-ECM adhesion, rather than in germ layers specification, as direct Yap targets. Dynamic analysis of live sensors and downstream targets reveal that Yap is acting in migratory cells, in which promotes cortical actin and focal adhesions recruitment. Our results indicate that Yap coordinates a mechano-regulatory loop essential to maintain the directed cell migration sustaining embryo axis development.
 
Overall design RNA-seq profile of wild type, yap-/- and yap-/- yap1b-/- mutant embryos at stage 16.
 
Contributor(s) Vázquez-Marín J, Sousa-Ortega A, Martínez-Morales JR, Almuedo-Castillo M
Citation(s) 37193708
Ana Sousa-Ortega, Javier Vazquez-Marin, Estefanía Sanabria-Reinoso, Rocío Polvillo, Alejandro Campoy-López, Lorena Buono, Felix Loosli, María Almuedo-Castillo, and Juan R. Martinez-Morales. A Yap-dependent transcriptional program directs cell migration for embryo axis assembly. bioRxiv 2022.02.06.479280; doi:10.1101/2022.02.06.479280
Submission date Apr 28, 2022
Last update date Aug 08, 2023
Contact name Javier Vázquez-Marín
E-mail(s) jvazmar89@gmail.com, javier.vazquez@cos.uni-heidelberg.de
Organization name Heidelberg University
Department Centre for Organismal Studies (COS)
Street address Im Neuenheimer Feld 230, 5th floor
City Heidelberg
State/province Baden-Württemberg
ZIP/Postal code 69120
Country Germany
 
Platforms (1)
GPL23308 Illumina HiSeq 2500 (Oryzias latipes)
Samples (10)
GSM6071590 RNAseq.stg16.WT 1
GSM6071591 RNAseq.stg16.WT 2
GSM6071592 RNAseq.stg16.WT 3
Relations
BioProject PRJNA833056

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201791_RAW.tar 1002.5 Mb (http)(custom) TAR (of BW)
GSE201791_RNAseq.HTseq-count.txt.gz 555.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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