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Series GSE201741 Query DataSets for GSE201741
Status Public on Feb 12, 2024
Title Target knockdown after systemic OTV administration in mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Using single nucleus RNA sequencing, we knockdown of Malat1 across all cell types upon peripheral administration of OTV:Malat1.
 
Overall design TfR.KI mice received four weekly doses of 60mpk OTV:Malat1, nonTV:Malat1, Malat1 ASO (at an ASO-equivalent dose), or TV with no ASO. Tissues were harvested 72 hours after the final dose and snap frozen for molecuar analysis.
Web link https://www.biorxiv.org/content/10.1101/2023.04.25.538145v1
 
Contributor(s) Barker S, Ha C, Tatarakis D, Sandmann T
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 27, 2022
Last update date Feb 12, 2024
Contact name David Tatarakis
E-mail(s) tatarakis@dnli.com, genomics@dnli.com
Organization name Denali Therapeutics
Department Discovery Genomics
Street address 161 Oyster Point Blvd
City South San Francisco
State/province California
ZIP/Postal code 94080
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (11)
GSM6070459 ATV:BACE1_Multi_1
GSM6070460 RSV-ASO_Multi_1
GSM6070461 OTV_Multi_1
Relations
BioProject PRJNA832805

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE201741_final_counts.mtx.gz 574.9 Mb (ftp)(http) MTX
GSE201741_final_meta_data.csv.gz 4.2 Mb (ftp)(http) CSV
GSE201741_final_object_cells.tsv.gz 736.3 Kb (ftp)(http) TSV
GSE201741_final_object_genes.tsv.gz 165.9 Kb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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