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| Status |
Public on Nov 11, 2022 |
| Title |
ChIP-seq of PtrVCS2 fuse FLAG overexpression plants |
| Organism |
Populus trichocarpa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
ChIP-seq was carried out with FLAG antibody using stem cambium tissues from PtrVCS2-FLAG overexpression plants
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| Overall design |
Six samples were analyzed, including input DNA, 3 biological replicates and IP DNA, 3 biological replicates
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| Contributor(s) |
Dai X |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA814008 |
| |
| Submission date |
Apr 18, 2022 |
| Last update date |
Nov 14, 2022 |
| Contact name |
Xiufang Dai |
| E-mail(s) |
daixiufang@nefu.edu.cn
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| Organization name |
Northeast Forestry University
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| Department |
School of Forestry, State key laboratory of tree genetics and breeding
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| Street address |
Hexing Road 26#, Xiangfang District
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| City |
Harbin |
| ZIP/Postal code |
150040 |
| Country |
China |
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| Platforms (1) |
| GPL26322 |
Illumina NextSeq 500 (Populus trichocarpa) |
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| Samples (6)
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| GSM6048442 |
PtrVCS2-3×FLAG overexpression plants, IP_DNA, rep 1 |
| GSM6048443 |
PtrVCS2-3×FLAG overexpression plants, IP_DNA, rep 2 |
| GSM6048444 |
PtrVCS2-3×FLAG overexpression plants, IP_DNA, rep 3 |
| GSM6048445 |
PtrVCS2-3×FLAG overexpression plants, input_DNA, rep1 |
| GSM6048446 |
PtrVCS2-3×FLAG overexpression plants, input_DNA, rep 2 |
| GSM6048447 |
PtrVCS2-3×FLAG overexpression plants, input_DNA, rep 3 |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE201005_RAW.tar |
85.5 Mb |
(http)(custom) |
TAR (of BW, NARROWPEAK) |
| GSE201005_bioinput.bw |
33.3 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
| Raw data are available in SRA |
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