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| Status |
Public on Apr 21, 2022 |
| Title |
Transcriptome of tomato leaf tissue grown under OSC filters |
| Organism |
Solanum lycopersicum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To characterize plant growth in net zero energy greenhouse models covered with semi-transparent organic solar cells (OSCs), RNA was extracted from tomato leaf tissue. Six experimental treatments were created with three OSC filters: FTAZ:IT-M, PTB7-Th:IEICO-4F, FTAZ:PCBM. Boxes with either a clear glass cover or a spectrally-neutral cover were used as the high light (HC) control and the comparative light intensity (PC) control, respectively. These treatments were divided into 2 experiments. 4 treatments (3 OSC boxes and control) had a consistent light intensity and were called the PPFD Controlled (PC) experiment. The other 4 treatments were the Height Controlled (HC) experiment and had more variation in light intensity between treatments due to a consistent distance from the growth chamber light source (height). Plants in the FP_PC treatment flowered one day later than the PC control. FI_PC flowered one day earlier. Gene expression in samples from the FP_PC treatment had a distinct pattern related to flowering initiation.
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| Overall design |
Leaf tissue was sampled from 4 individual plants grown under one of eight light spectra and intensity conditions. Samples were collected under growth conditions.
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| Contributor(s) |
Charles M, Edwards B, Calero J, Sederoff H |
| Citation(s) |
36909444 |
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| Submission date |
Apr 18, 2022 |
| Last update date |
Jun 21, 2023 |
| Contact name |
Heike Sederoff |
| E-mail(s) |
hwsedero@ncsu.edu
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| Organization name |
North Carolina State University
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| Department |
Plant & Microbial Biology
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| Lab |
Sederoff Lab
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| Street address |
851 Main Campus Dr
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| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27695-7612 |
| Country |
USA |
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| Platforms (1) |
| GPL28981 |
DNBSEQ-G400 (Solanum lycopersicum) |
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| Samples (31)
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| GSM6047737 |
FTAZ:IT-M, PC4 |
| GSM6047738 |
Control, PC1 |
| GSM6047739 |
Control, PC2 |
| GSM6047740 |
Control, PC3 |
| GSM6047741 |
Control, PC4 |
| GSM6047742 |
PTB7-Th:IEICO-4F, PC1 |
| GSM6047743 |
PTB7-Th:IEICO-4F, PC2 |
| GSM6047744 |
PTB7-Th:IEICO-4F, PC3 |
| GSM6047745 |
PTB7-Th:IEICO-4F, PC4 |
| GSM6047746 |
FTAZ:PCBM, PC1 |
| GSM6047747 |
FTAZ:PCBM, PC2 |
| GSM6047748 |
FTAZ:PCBM, PC3 |
| GSM6047749 |
FTAZ:PCBM, PC4 |
| GSM6047750 |
PTB7-Th:IEICO-4F, HC1 |
| GSM6047751 |
PTB7-Th:IEICO-4F, HC3 |
| GSM6047752 |
PTB7-Th:IEICO-4F, HC4 |
| GSM6047753 |
Control, HC1 |
| GSM6047754 |
Control, HC2 |
| GSM6047755 |
Control, HC3 |
| GSM6047756 |
Control, HC4 |
| GSM6047757 |
FTAZ:IT-M, HC1 |
| GSM6047758 |
FTAZ:IT-M, HC2 |
| GSM6047759 |
FTAZ:IT-M, HC3 |
| GSM6047760 |
FTAZ:IT-M, HC4 |
| GSM6047761 |
FTAZ:PCBM, HC1 |
| GSM6047762 |
FTAZ:PCBM, HC2 |
| GSM6047763 |
FTAZ:PCBM, HC3 |
| GSM6047764 |
FTAZ:PCBM, HC4 |
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| Relations |
| BioProject |
PRJNA827793 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE200978_RAW.tar |
142.2 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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