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Series GSE200956 Query DataSets for GSE200956
Status Public on Apr 22, 2022
Title Epigenome-wide association analysis on weighted life events in PD patients - replication cohort
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Background: Panic disorder (PD) is characterized by recurrent panic attacks and higher affection of women as compare to men. The lifetime prevalence of PD is about 2-3 % in the general population leading to tremendous distress and disability. Etiologically, genetic and environmental factors, such as stress, contribute to the onset and relapse of PD. In the present study, we investigated epigenome-wide DNA methylation (DNAm) in respond to a cumulative, stress-weighted life events score (wLE) in patients with PD and its boundary to major depressive disorder (MDD), frequently co-occurring with symptoms of PD.
Methods: DNAm was assessed by the Illumina HumanMethylation450 BeadChip. In a meta-analytic approach, epigenome-wide DNAm changes in association with wLE were first analyzed in two PD cohorts (with a total sample size of 183 PD patients and 85 healthy controls) and lastly in 102 patients with MDD to identify possible overlapping and opposing effects of wLE on DNAm. Additionally, analysis of differentially methylated regions (DMRs) was conducted to identify regional clusters of association.
Results: Two CpG-sites presented with p-values below 1x10-05 in PD: cg09738429 (p=6.40x10-06, located in an intergenic shore region in next proximity of PYROXD1) and cg03341655 (p=8.14x10-06, located in the exonic region of GFOD2). The association of DNAm at cg03341655 and wLE could be replicated in the independent MDD case sample indicating a diagnosis independent effect. Genes mapping to the top hits were significantly upregulated in brain and top hits have been implicated in the metabolic system. Additionally, two significant DMRs were identified for PD only on chromosome 10 and 18, including CpG-sites which have been reported to be associated with anxiety and other psychiatric phenotypes.
Conclusion: This first DNAm analysis in PD reveals first evidence of small but significant DNAm changes in PD in association with cumulative stress-weighted life events. Most of the top associated CpG-sites are located in genes implicated in metabolic processes supporting the hypothesis that environmental stress contributes to health damaging changes by affecting a broad spectrum of systems in the body.
 
Overall design DNAm was assessed by the Illumina HumanMethylation450 BeadChip. In a meta-analytic approach, epigenome-wide DNAm changes in association with weighted life events were analyzed in two PD cohorts (with a total sample size of 183 PD patients and 85 healthy controls). This is the data from the replication cohort.
Bisulphite converted DNA from the 159 samples were hybridized to the Illumina Infinium 450k Human Methylation Beadchip
 
Contributor(s) Czamara D, Iurato S, Erhardt A
Citation(s) 35477560
Submission date Apr 18, 2022
Last update date Jul 22, 2022
Contact name Binder Elisabeth
E-mail(s) binder@psych.mpg.de
Organization name Max-Planck-Institute Psychiatry
Street address Kraepelinstr. 2+10
City Munich
ZIP/Postal code 80804
Country Germany
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (159)
GSM6047157 peripheral blood (9611518026_R04C02)
GSM6047158 peripheral blood (9611518019_R03C02)
GSM6047159 peripheral blood (9259684060_R02C02)
This SubSeries is part of SuperSeries:
GSE201016 Effects of stressful life-events on DNA methylation in panic disorder and major depressive disorder
Relations
BioProject PRJNA827766

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200956_RAW.tar 1.5 Gb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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