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Series GSE200952 Query DataSets for GSE200952
Status Public on Jun 16, 2022
Title Effects of NSUN6 deficiency by systematic transcriptomes and m5C profiles in mice across tissue [RNA-Seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary we constructed Nsun6-KO mouse, and observed that the wight and appearance of KO mice didn’t show abnormality. Through Bisulfite sequencing (BS-seq) in wild-type (WT) as well as KO mice and mRNA-seq, we identified high confident Nsun6-dependent m5C sites and performed the transcriptome analysis across five tissues.
 
Overall design mouse tissue
 
Contributor(s) Fang L
Citation(s) 35743028
Submission date Apr 18, 2022
Last update date Jun 30, 2022
Contact name Liang Fang
E-mail(s) fangl@sustech.edu.cn
Organization name Southern University of Science and Technology
Department Department of Biology
Street address Shenzhen, Guangdong
City shenzhen
ZIP/Postal code 518005
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (20)
GSM6047008 RNA-seq of small_intestine_WT_rep1
GSM6047009 RNA-seq of small_intestine_WT_rep2
GSM6047010 RNA-seq of small_intestine_KO_rep1
This SubSeries is part of SuperSeries:
GSE200953 Effects of NSUN6 deficiency by systematic transcriptomes and m5C profiles in mice across tissue
Relations
BioProject PRJNA827759

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200952_mouse_tissues_RNA_seq_NSUN6KO.count.txt.gz 4.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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