NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE200477 Query DataSets for GSE200477
Status Public on Apr 19, 2022
Title Polysome profiling quantified by RNA sequencing in PANC1 cells treated with MNK2 inhibitors or DMSO
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Regenerating pancreatic b-cells is a potential curative approach for diabetes. We previously identified the small molecule CID661578 as a potent inducer of b-cell regeneration but its target and mechanism of action have remained unknown. We now screened 257 million yeast clones and determined that CID661578 targets MAP kinase-interacting serine/threonine kinase 2 (MNK2), an interaction that was genetically validated in vivo. CID661578 increased b-cell neogenesis from ductal cells in zebrafish, neonatal pig islet aggregates and human pancreatic ductal organoids. Mechanistically, we found that CID661578 boosts protein synthesis and regeneration by blocking MNK2 from binding EIF4G in the translation initiation complex at the mRNA cap. This blocking activity augmented the interaction between EIF4E and EIF4G, which is necessary for both hypertranslation and b-cell regeneration. Taken together, our findings demonstrate a targetable role of MNK2-controlled translation in b-cell regeneration, a role that warrants further investigation in diabetes.
 
Overall design Four replicated of polysome profiling were performed on PANC1 cells treated with MNK2 inhibitors (CID661578 [40uM], and cercosporamide [5uM]) or DMSO for 6 hours. Total cytosolic RNA, and polysome-associated mRNA (mRNA associated with > 3 ribosomes) were quantified using RNA sequencing.
 
Contributor(s) Watt K, Larsson O, Andersson O
Citation(s) 35697798
Submission date Apr 08, 2022
Last update date Aug 16, 2022
Contact name Ola Larsson
E-mail(s) ola.larsson@ki.se
Phone +46 (0)8 517 73280
Organization name Karolinska Institutet
Department Department of oncology-pathology
Street address CCK, R8:01
City Stockholm
ZIP/Postal code 171 76
Country Sweden
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM6034806 PANC1 DMSO total rep 1
GSM6034807 PANC1 DMSO poly rep 1
GSM6034808 PANC1 DMSO total rep 2
Relations
BioProject PRJNA824788

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200477_rawCounts.tsv.gz 947.3 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap