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Series GSE200217 Query DataSets for GSE200217
Status Public on Jul 06, 2022
Title Melanoma Brain Metastasis Atlas [patient_cell_lines_RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Bulk RNA-seq on 24 patient-derived cell lines corresponding to 4 melanoma brain metastases (MBM) and 4 peripheral/extracranial melanoma metastses (ECM).
 
Overall design We performed bulk RNA-seq on 24 patient-derived cell lines (in triplicates) corresponding to 4 melanoma brain metastases (MBM) and 4 peripheral/extracranial melanoma metastses (ECM).
>>>Submitter states: Due to patient privacy concerns the raw data will be submitted to dbGAP.<<<
 
Contributor(s) Izar B, Biermann J, Melms JC
Citation(s) 35803246
Submission date Apr 05, 2022
Last update date Jul 21, 2022
Contact name Jana Biermann
E-mail(s) jb4424@cumc.columbia.edu
Organization name Columbia University
Street address 622 W168th Street
City New York
State/province New York
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
GSM6022227 BI3-A
GSM6022228 BI3-B
GSM6022229 BI3-C
This SubSeries is part of SuperSeries:
GSE185386 Melanoma Brain Metastasis Atlas
Relations
BioProject PRJNA823684

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE200217_RAW.tar 62.5 Mb (http)(custom) TAR (of TSV)
GSE200217_patient_cell_lines_RNA-seq_counts.csv.gz 827.7 Kb (ftp)(http) CSV
GSE200217_patient_cell_lines_metadata.csv.gz 261 b (ftp)(http) CSV
Processed data are available on Series record
Processed data provided as supplementary file
Raw data not provided for this record

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