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Series GSE20015 Query DataSets for GSE20015
Status Public on Nov 15, 2010
Title Phosphatidylinositol 3-Kinase (PI3K) Signaling via Glycogen Synthase Kinase-3 (Gsk-3) Regulates DNA Methylation of Imprinted Loci.
Organism Mus musculus
Experiment type Expression profiling by array
Summary The two vertebrate Gsk-3 isoforms, Gsk-3a and Gsk-3b, are encoded by distinct genetic loci and exhibit mostly redundant function in murine embryonic stem cells (ESCs). Here we report that deletion of both Gsk-3a and Gsk-3b in mouse ESCs results in misregulated expression of imprinted genes and hypomethylation of corresponding imprinted loci. Treatment of wild-type ESCs with small molecule inhibitors of Gsk-3 phenocopies the DNA hypomethylation of imprinted loci observed in Gsk-3 null ESCs. We provide evidence that DNA hypomethylation in Gsk-3 null ESCs is due to a reduction in the levels of the de novo DNA methyltransferase, Dnmt3a2.
Gsk-3 activity serves as a node for several signal transduction pathways, and its regulation of Dnmt3a2 expression raises the possibility that DNA methylation could be transiently affected by different types of environmental stimuli. Our data suggest that modulating Gsk-3 activity could have further reaching effects in the regulation of the epigenome.

Keywords: Gene expression array-based
 
Overall design The study was designed to examine the changes in gene expression between wild-type and Gsk-3a-/-;Gsk-3b-/- mouse embryonic stem cells.
 
Contributor(s) Popkie AP, Zeidner LC, Albrecht AM, Eckardt S, Newsom DE, Aronow B, Groden J, McLaughlin KJ, White P, Phiel CJ
Citation(s) 21047779
Submission date Jan 22, 2010
Last update date Feb 11, 2019
Contact name Christopher Phiel
E-mail(s) phiel.1@osu.edu
Organization name The Research Institute at Nationwide Children's Hospital
Street address 700 Children's Drive W432
City Columbus
State/province OH
ZIP/Postal code 43205
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (6)
GSM499765 Gsk-3a-/-; Gsk-3b-/- ESCs Rep1
GSM499766 Gsk-3a-/-; Gsk-3b-/- ESCs Rep2
GSM499767 Gsk-3a-/-; Gsk-3b-/- ESCs Rep3
Relations
BioProject PRJNA124089

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Supplementary file Size Download File type/resource
GSE20015_RAW.tar 22.4 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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