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Series GSE199977 Query DataSets for GSE199977
Status Public on Apr 12, 2022
Title Dual-transcritome analysis of germinating Arabidopsis seeds in response to necrotrophic fungus Alternaria brassicicola
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We analyzed dual-transcriptome changes in germinating Arabidopsis seeds at three development stages (3, 6 and 10 days after sowing) with or without Alternaria brassicicola. Differentailly expressed genes were identified from both seed and fungus.
 
Overall design Three replicates of at least 360 mg of seeds at three developemental stages using the model pathosystem Arabidopsis thaliana/Alternaria brassicicola
 
Contributor(s) Grappin P
Citation(s) 35807659
Submission date Apr 01, 2022
Last update date Jul 28, 2022
Contact name Jerome Verdier
E-mail(s) Jerome.verdier@inrae.fr
Organization name INRAE / IRHS
Lab SEED
Street address Rue Georges Morel
City Angers
ZIP/Postal code 49000
Country France
 
Platforms (1)
GPL28290 DNBSEQ-G400 (Arabidopsis thaliana)
Samples (18)
GSM6000806 RNAs from infected seed et collected at 3 days after sowing - Col0_inoc 1
GSM6000807 RNAs from infected seed et collected at 3 days after sowing - Col0_inoc 2
GSM6000808 RNAs from infected seed et collected at 3 days after sowing - Col0_inoc 3
Relations
BioProject PRJNA822388

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE199977_Abra_count.csv.gz 388.6 Kb (ftp)(http) CSV
GSE199977_At_count.csv.gz 2.1 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record
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