|
| Status |
Public on Aug 25, 2022 |
| Title |
ATAC-Seq analysis of wild-type and nm1-knockout mouse embryonic fibroblasts |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ATAC-Seq of wild-type and nm1-knockout mouse embryonic fibroblasts to investigate the impact of nm1 loss on chromatin accessibility
|
| |
|
| Overall design |
ATAC sequencing was performed for 6 samples (2 different cell types with three biological replicates each)
|
| |
|
| Contributor(s) |
Venit T, Mahmood SR, Percipalle P |
| Citation(s) |
37816864 |
| |
| Submission date |
Mar 18, 2022 |
| Last update date |
Oct 24, 2023 |
| Contact name |
Piergiorgio Percipalle |
| E-mail(s) |
pp69@nyu.edu
|
| Organization name |
New York University Abu Dhabi
|
| Department |
Biology Department, Science Division
|
| Street address |
Saadiyat Campus, Abu Dhabi
|
| City |
Abu Dhabi |
| State/province |
Abu Dhabi |
| ZIP/Postal code |
129188 |
| Country |
United Arab Emirates |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (6)
|
| GSM5962100 |
NM1 knockout Mouse Embryonic Fibroblast, rep1 (ATAC-Seq) |
| GSM5962101 |
NM1 knockout Mouse Embryonic Fibroblast, rep2 (ATAC-Seq) |
| GSM5962102 |
NM1 knockout Mouse Embryonic Fibroblast, rep3 (ATAC-Seq) |
| GSM5962103 |
Wild Type Mouse Embryonic Fibroblast, rep1 (ATAC-Seq) |
| GSM5962104 |
Wild Type Mouse Embryonic Fibroblast, rep2 (ATAC-Seq) |
| GSM5962105 |
Wild Type Mouse Embryonic Fibroblast, rep3 (ATAC-Seq) |
|
| This SubSeries is part of SuperSeries: |
| GSE198990 |
Wild-type and nm1-knockout mouse embryonic fibroblasts |
|
| Relations |
| BioProject |
PRJNA817667 |
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