 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Mar 01, 2023 |
| Title |
HuR modulation impairs LPS-response in murine macrophages |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Lipopolysaccharide exposure to macrophages induces an inflammatory response that is heavily regulated at the post-transcriptional level. HuR, ELAVL1, is an RNA binding protein that binds and regulate the maturation and half-life of AU/U rich elements (ARE) containing cytokines and chemokines transcripts, mediating the LPS induced response. Here we investigated to what extent small molecules inhibiting HuR-RNA interaction, called tanshinone mimics, counteract the LPS induced macrophage response. We show that tanshinone mimics are present in solution in a keto-enolic tautomerism and that, by molecular dynamic calculations, the ortho quinone form is the preferred species interacting with HuR and favoring the closure of its conformation to a no-binding mode. The protection of the enolic status with diacetate caused the loss of activity of tanshinone mimics in vitro but active in vivo. Murine macrophages cell line RAW264.7 was treated with LPS and tanshinone mimics and the modulation of the LPS induced response was monitored by RNA and Ribonucleoprotein immunoprecipitation sequencing. Correlation analyses indicated that LPS induced a strong coupling between differentially expressed genes and HuR-bound genes and that tanshinone mimics reduced the interaction. Functional annotation addressed a specific set of genes, as Cxcl10, Il1b, Cd40, Fas, involved in chemotaxis and immune response whose association with HuR decreased and led to a reduction of their protein level and secretion. The same effect was observed in primary murine bone marrow derived macrophages and in vivo in a LPS induced peritonitis model, in which the serum level of Cxcl10 and Il1b was strongly reduced, endowing tanshinone mimics with anti-inflammatory properties in vivo.
|
| |
|
| Overall design |
Murine macrophages cell line RAW264.7 was treated with LPS and tanshinone mimics and the modulation of the LPS induced response was monitored by RNA and Ribonucleoprotein immunoprecipitation sequencing.
|
| |
|
| Contributor(s) |
Bonomo I, Assoni G, Micaelli M, Zucal C, Facen E, Robbiati S, Piazza S, Provenzani A |
| Citation(s) |
36912171 |
| |
| Submission date |
Mar 14, 2022 |
| Last update date |
May 12, 2023 |
| Contact name |
Silvano Piazza |
| E-mail(s) |
silvano.piazza@icgeb.org
|
| Organization name |
ICGEB
|
| Lab |
Computational Biology
|
| Street address |
localita' Padriciano 99
|
| City |
Trieste |
| ZIP/Postal code |
34149 |
| Country |
Italy |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (27)
|
|
| Relations |
| BioProject |
PRJNA816099 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE198605_counts.txt.gz |
2.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...