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Series GSE197400 Query DataSets for GSE197400
Status Public on Feb 22, 2023
Title Meis1 establishes the pre-hemogenic endothelial state prior to Runx1 expression II
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Hematopoietic stem and progenitor cells (HSPCs) originate from an endothelial-to-hematopoietic transition (EHT) during embryogenesis. Characterization of early hemogenic endothelial (HE) cells is required to understand what drives hemogenic specification and to accurately define cells capable of undergoing EHT. Using Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq), we defined the early subpopulation of pre-HE cells based on both surface markers and transcriptomes. We identified the transcription factor Meis1 as an essential regulator of hemogenic cell specification in the embryo prior to Runx1 expression. Meis1 is expressed at the earliest stages of EHT and distinguishes pre-HE cells primed towards the hemogenic trajectory from the arterial endothelial cells that continue towards a vascular fate. Endothelial-specific deletion of Meis1 impaired the formation of functional Runx1-expressing HE which significantly impeded the emergence of pre-HSPC via EHT. Our findings implicate Meis1 in a critical fate-determining step for establishing EHT potential in endothelial cells.
 
Overall design Primary aortic endothelial cells were transduced to overexpressed Meis1 or a control vector, each done in triplicates.
 
Contributor(s) Coulombe P, Karsan A, Fentiman A, Parker JD, Tam D, Yung E, Humphries RK
Citation(s) 37500618
Submission date Feb 24, 2022
Last update date Jul 28, 2023
Contact name Aly Karsan
E-mail(s) akarsan@bcgsc.ca
Phone 6047075900
Organization name Canada's Michael Smith Genome Sciences Centre
Street address 570 W 7th Ave, 100
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 4S6
Country Canada
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM5916385 Meis1-overexpressing_EC_rep1
GSM5916386 Meis1-overexpressing_EC_rep2
GSM5916387 Meis1-overexpressing_EC_rep3
Relations
BioProject PRJNA810085

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE197400_meis1_oe_gene_counts.txt.gz 498.6 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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