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| Status |
Public on Sep 14, 2022 |
| Title |
H3K18la marks active tissue-specific enhancers [Cut & Tag human] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
We profiled the genome-wide distribution of H3K18la in samples originating from 6 different in vitro and in vivo mouse samples, representing 3 tissues: embryonic stem cells, macrophages and skeletal muscle as well as in human skeletal muscle and compared them to the profiles of other well-established histone modifications as well as gene expression patterns. Globally, we found that H3K18la profiles resemble H3K27ac profiles better than any other investigated hPTM, including H3K4me3, but that they do not copy them. For all samples, H3K18la marked active CGI promoters of highly expressed genes which were remarkably shared across the different mouse tissues and which contained many housekeeping genes. Promoter H3K18la levels correlated positively to both H3K27ac and H3K4me3 levels as well as to gene expression levels. In addition, we found that H3K18la is enriched at tissue-type specific, active enhancers, which are particularly tissue-type-specific, especially when compared to the H3K18la-marked promoter regions. Accordingly, enhancer H3K18la levels correlate positively to the expression of their nearest genes. Additionally, genes closest to enhancers with high H3K18la levels predominantly consist of tissue-type specific marker genes. Overall, we showed that H3K18la is not only a marker for active promoters, but that it also marks active enhancers, and this both in embryonic tissues and differentiated tissues, and both in mouse and in human.
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| Overall design |
We profiled human (female) vastus lateralis muscle for 5 different histone post-translational modifications to investigate the role and profile of H3K18la in human muscle. Specifically, we profiled H3K4me3, H3K27ac, H3K27me3, H3K9me3 and H3K18la in biological duplicates.
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| Contributor(s) |
Galle E, Ghosh A, Ruiz J, von Meyenn F |
| Citation(s) |
36192798 |
| |
| Submission date |
Feb 01, 2022 |
| Last update date |
Oct 27, 2022 |
| Contact name |
Ferdinand von Meyenn |
| E-mail(s) |
ferdinand.vonmeyenn@hest.ethz.ch
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| Organization name |
ETH Zurich
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| Department |
Health Sciences and Technology
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| Lab |
Nutrition and Metabolic Epigenetics
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| Street address |
Schorenstrasse 16
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| City |
Schwerzenbach |
| State/province |
Zurich |
| ZIP/Postal code |
8603 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE195860 |
H3K18la marks active tissue-specific enhancers |
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| Relations |
| BioProject |
PRJNA802362 |
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