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Series GSE193773 Query DataSets for GSE193773
Status Public on Mar 31, 2022
Title Estrogen Modulation of the Pronociceptive Effects of Serotonin on Female Rat Trigeminal Sensory Neurons is Timing- and Dosage-Dependent and Requires Estrogen Receptor Alpha
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Since estrogen is a major hormone involved in multiple gene expression pathways in the cell, we wanted to determine the corresponding changes in trigeminal ganglia transcriptome of the E2-treated rats. Adult ovariectomized female rats were subcutaneneously implanted with either 5% (physiological level comparable to diestrus; 15-20 pg/ml; one capsule), 20% (physiological level comparable to proestrus; 40-60 pg/ml; 2 capsules of 10%), 40% (supraphysiological level; 2 capsules of 20%) E2, or control (2 capsules of 100% cholesterol) capsules. One week after implantation, nocifensive behaviors were recorded and trigeminal ganglia tissue was extracted.
 
Overall design Total RNA was extracted from the right trigeminal ganglia (TG) tissue (n=3 per hormone treatment group) and sequenced [Novogene; sequencing lab at The University of California at Davis campus]
 
Contributor(s) Kaur S, Hickman TM, Lopez-Ramirez A, McDonald H, Lockhart LM, Darwish O, Averitt DL
Citation(s) 35121697
NIH grant(s)
Grant ID Grant title Affiliation Name
R15 DE025970 Sex Differences in Serotonergic Modulation of Trigeminal Pain TEXAS WOMAN'S UNIVERSITY Dayna Loyd Averitt
Submission date Jan 16, 2022
Last update date Apr 02, 2022
Contact name Dayna Loyd Averitt
E-mail(s) daveritt@twu.edu
Phone 9408982708
Organization name Texas Woman's University
Department Biology
Street address 1000 Old Main Circle
City Denton
State/province Texas
ZIP/Postal code 76204
Country USA
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (12)
GSM5820794 Chronic Veh_TG1
GSM5820795 Chronic Veh_TG2
GSM5820796 Chronic Veh_TG3
Relations
BioProject PRJNA797795

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE193773_Gene_counts_matrix.txt.gz 1.3 Mb (ftp)(http) TXT
GSE193773_RAW.tar 2.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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