|
| Status |
Public on Dec 10, 2022 |
| Title |
A single cell map of murine heart at embryonic and neonatal stages |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Cardiac cells from the wildtype mouse hearts in two strains (CD1, C57BL/6) at 18 developmental stages with chamber separation and two mutant strains (wt1, tbx18) at multiple stages were isolated, multiplexed using the MULTI-seq approach, profiled with the 10X scRNA-seq platform and sequenced with Illumina HiSeq or Nova-seq.
|
| |
|
| Overall design |
ScRNA-seq analysis of wild type and mutant mouse heart cells at multiple stages.
|
| |
|
| Contributor(s) |
Li G, Feng W, Bais A |
| Citation(s) |
36575170 |
| |
| Submission date |
Jan 10, 2022 |
| Last update date |
Jan 11, 2023 |
| Contact name |
guang li |
| E-mail(s) |
guangli@pitt.edu
|
| Organization name |
university of pittsburgh
|
| Street address |
530 45th St. 8116 Rangos Research Center
|
| City |
Pittsburgh |
| State/province |
PA |
| ZIP/Postal code |
15201 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL21273 |
HiSeq X Ten (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (7)
|
|
| Relations |
| BioProject |
PRJNA795900 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE193346_C57BL6_metadata.csv.gz |
3.0 Mb |
(ftp)(http) |
CSV |
| GSE193346_C57BL6_seurat_object.rds.gz |
4.6 Gb |
(ftp)(http) |
RDS |
| GSE193346_CD1_metadata.csv.gz |
3.2 Mb |
(ftp)(http) |
CSV |
| GSE193346_CD1_seurat_object.rds.gz |
5.0 Gb |
(ftp)(http) |
RDS |
| GSE193346_multiSeqBarcodes_to_samples_mouse.xlsx |
15.4 Kb |
(ftp)(http) |
XLSX |
| GSE193346_tbx18_metadata.csv.gz |
2.0 Mb |
(ftp)(http) |
CSV |
| GSE193346_tbx18_seurat_object.rds.gz |
2.9 Gb |
(ftp)(http) |
RDS |
| GSE193346_wt1_metadata.csv.gz |
802.4 Kb |
(ftp)(http) |
CSV |
| GSE193346_wt1_seurat_object.rds.gz |
1.1 Gb |
(ftp)(http) |
RDS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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