|
| Status |
Public on May 27, 2022 |
| Title |
Whole genome bisulfite sequencing data of cassava |
| Organism |
Manihot esculenta |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
Cassava mosaic disease (CMD) suppresses cassava yields across the tropics. It has been reported that landraces lose CMD resistance after regeneration through de novo morphogenesis. We sequenced WGBS data of 14 samples.
|
| |
|
| Overall design |
This dataset includes whole genome sequencing and WGBS data to understand DNA methylation in cassava.
|
| |
|
| Contributor(s) |
Zhong Z |
| Citation(s) |
36318278 |
| |
| Submission date |
Dec 29, 2021 |
| Last update date |
Feb 10, 2023 |
| Contact name |
Zhenhui Zhong |
| E-mail(s) |
zhenhuizhong@gmail.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Department of Molecular, Cell and Developmental Biology
|
| Lab |
Jacobsen Lab
|
| Street address |
610 Charles E Young Dr East
|
| City |
Los Angeles |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL28909 |
Illumina NovaSeq 6000 (Manihot esculenta) |
|
| Samples (14)
|
| GSM5764455 |
WGS data of OES-derived-line rep1 |
| GSM5764456 |
WGS data of OES-derived-line rep2 |
| GSM5764457 |
WGS data of OES-derived-line rep3 |
| GSM5764458 |
WGS data of Organogenesis-derived-resistant-line rep1 |
| GSM5764459 |
WGS data of Organogenesis-derived-resistant-line rep2 |
| GSM5764460 |
WGS data of Organogenesis-derived-resistant-line rep3 |
| GSM5764461 |
WGS data of Organogenesis-derived-susceptible-line rep1 |
| GSM5764462 |
WGS data of Organogenesis-derived-susceptible-line rep2 |
| GSM5764463 |
WGS data of Organogenesis-derived-susceptible-line rep3 |
| GSM5764464 |
WGS data of TME204 wild type |
| GSM5764465 |
WGS data of FEC-derived-line |
|
| Relations |
| BioProject |
PRJNA793021 |
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