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| Status |
Public on Dec 23, 2021 |
| Title |
Comparison of mitochondrial unprocessed RNA frequency in wild type and mutant mitochondrial RNA polymerase overexpression flies. |
| Organism |
Drosophila melanogaster |
| Experiment type |
Other
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| Summary |
The goal of this study is to compare the frequency of unprocessed preRNAs in mitochondria. Total mitochondrial RNA profiles of adult flies were generated in triplicates. We analyzed over 100 million reads for each group and used featureCounts to perform quantification allowing a read to be assigned to more than one gene. Using this analysis pipe line, we mapped about 30 million reads per sample to the Drosophila mitochondrial genome and identified a fequency of unprocessed preRNAs as 0.43% in PolrMT group, which is similar to that in PolrMT-E423P flies. These result revealed that overexpression of PolrMT-E423P does not contribute to pre-RNA processing.
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| Overall design |
Total mitochondrial RNA profiles of PolrMT (mitochondrial RNA polymerase) and PolrMT-E423P overexpression flies were generated by deep sequencing in triplicate to examine mitochondrial unprocessed preRNAs frequency.
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| Contributor(s) |
Liu Y, Tunc I, Li Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Dec 23, 2021 |
| Last update date |
Dec 23, 2021 |
| Contact name |
Mehdi Pirooznia |
| E-mail(s) |
pirooznia@gmail.com
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| Phone |
410-340-6052
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| Organization name |
National Institutes of Health
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| Street address |
12 SOUTH DR
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
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| Platforms (1) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA791921 |
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