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Status |
Public on Jul 08, 2022 |
Title |
MSH1 disruption in plants triggers RdDM-mediated reprogramming of phenotypic plasticity (RNA-Seq) |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
To generate epi-lines, two third-generation msh1 T-DNA mutant (SAIL_877_F01) plants were used to pollinate Col-0 to generate two independent F1 populations. Derived F1 progenies were self-pollinated to generate F2 populations that were genotyped for the msh1 T-DNA mutation. MSH1 F2 plants were self-pollinated to produce F3 families that were used in the study.
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Overall design |
3 plants from each of the epi populations and Col-0 WT control were sequenced.
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Contributor(s) |
Kundariya H, Yang X, Mackenzie S |
Citation missing |
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Submission date |
Dec 21, 2021 |
Last update date |
Jul 12, 2022 |
Contact name |
Hardik Kundariya |
E-mail(s) |
hsk13.psu@gmail.com
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Organization name |
The Pennsylvania State University
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Street address |
361 N. Frear
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City |
University Park |
State/province |
PA |
ZIP/Postal code |
16801 |
Country |
USA |
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Platforms (1) |
GPL26208 |
Illumina NovaSeq 6000 (Arabidopsis thaliana) |
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Samples (27)
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Relations |
BioProject |
PRJNA791386 |
SRA |
SRP351988 |