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GEO accession:
Series GSE191307
Query DataSets for GSE191307
Status
Public on Dec 27, 2021
Title
Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time
Organism
Arabidopsis thaliana
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34954804
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R01 GM112851
Regulation of DNA methylation homeostasis in Arabidopsis
WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH
Mary Gehring
Submission date
Dec 20, 2021
Last update date
Dec 29, 2021
Contact name
Mary Gehring
Organization name
Whitehead Institute for Biomedical Research
Street address
9 Cambridge Center
City
Cambridge
State/province
MA
ZIP/Postal code
02142
Country
USA
Platforms (1)
GPL17639
Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (45)
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More...
GSM5737438
WT A Rosette leaf BS-seq
GSM5737439
WT B Rosette leaf BS-seq
GSM5737440
WT C Rosette leaf BS-seq
GSM5737441
WT D Rosette leaf BS-seq
GSM5737442
dme A Rosette leaf BS-seq
GSM5737443
dme B Rosette leaf BS-seq
GSM5737444
dme C Rosette leaf BS-seq
GSM5737445
dme D Rosette leaf BS-seq
GSM5737446
rdd A Rosette leaf BS-seq
GSM5737447
rdd B Rosette leaf BS-seq
GSM5737448
rdd C Rosette leaf BS-seq
GSM5737449
rdd D Rosette leaf BS-seq
GSM5737450
drdd A Rosette leaf BS-seq
GSM5737451
drdd B Rosette leaf BS-seq
GSM5737452
drdd C Rosette leaf BS-seq
GSM5737453
drdd D Rosette leaf BS-seq
GSM5737454
WT Col-0 3F Rosette leaf BS-seq
GSM5737455
WT Col-0 5E Rosette leaf BS-seq
GSM5737456
WT Col-0 3F Cauline leaf BS-seq
GSM5737457
WT Col-0 5E Cauline leaf BS-seq
GSM5737458
WT Col-0 3F Flower buds BS-seq
GSM5737459
WT Col-0 5E Flower buds BS-seq
GSM5737460
WT Col-0 3F Embryos BS-seq
GSM5737461
WT Col-0 5E Embryos BS-seq
GSM5737462
rdr2 Rosette leaf BS-seq
GSM5737463
rdr2 Cauline leaf BS-seq
GSM5737464
rdr2 Flower buds BS-seq
GSM5737465
rdr2 Embryos BS-seq
GSM5737466
WT Rosette leaf EM-seq
GSM5737467
drdd Rosette leaf EM-seq
GSM5743335
WT A Rosette leaf RNA-seq
GSM5743336
WT B Rosette leaf RNA-seq
GSM5743337
WT C Rosette leaf RNA-seq
GSM5743338
WT D Rosette leaf RNA-seq
GSM5743339
dme A Rosette leaf RNA-seq
GSM5743340
dme B Rosette leaf RNA-seq
GSM5743341
dme C Rosette leaf RNA-seq
GSM5743342
dme D Rosette leaf RNA-seq
GSM5743343
rdd A Rosette leaf RNA-seq
GSM5743344
rdd B Rosette leaf RNA-seq
GSM5743345
rdd C Rosette leaf RNA-seq
GSM5743346
rdd D Rosette leaf RNA-seq
GSM5743347
drdd B Rosette leaf RNA-seq
GSM5743348
drdd C Rosette leaf RNA-seq
GSM5743349
drdd D Rosette leaf RNA-seq
This SuperSeries is composed of the following SubSeries:
GSE191006
Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time [BiSulfite-seq]
GSE191304
Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time [RNA-seq]
Relations
BioProject
PRJNA790955
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE191307_RAW.tar
6.7 Gb
(http)
(custom)
TAR (of BED, TXT)
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